BAC Information

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BAC

Clone NameMSMg01-125B21
Chromosome8 (Build37)
Map Location 85,562,803 - 85,722,632
singlet/doubletdoublet
Overlap geneRnf150, LOC100039688, Tbc1d9
Upstream geneInpp4b, LOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330
Downstream geneUcp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125B21.T7 (MSMg01no125_b21.b1)MSMg01-125B21.TJ (MSMg01no125_b21.g1)
ACCAG334293AG334294
length728717
length of high quality
(start - end)
591 (77 - 667)492 (46 - 537)
definitionCHROMAT_FILE: MSMg01no125_b21.b1 PHD_FILE: MSMg01no125_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:03 2005CHROMAT_FILE: MSMg01no125_b21.g1 PHD_FILE: MSMg01no125_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,562,803 - 85,563,393)(85,722,157 - 85,722,632)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAAGGCGCG
GAATTCAAGATTCCATCACATGGTTATGCACCACCATGATCCCTTATTTC
ATTCTTAAATGTTACACATGACTAAACTAGCACAGAGCTGTGTGAATTAG
GAGACATTACTTACACCATCACTTCTTTAAGGCAGTTTAAGGAAATGGTC
TTAATTTCTTCCCATATTCTAAATTAGTTTATTTTAGCTTAGTCTAGTCT
TGTCTTGTCTTCTTCAGACAGATTCTCCCTAGGTAACTCAGACTGATCTT
AAAGTTGTGATCCTCCTGCCTCAGACTTCCAAGGATCCCTGGGATTACAG
TTATGCACCACCATACTGCACTGGGGATTTCTTATTTAAGGACCATTGGG
AAGAGCCCACCTCTGCACAGTGATGCCTGTCAGTCCTTCACCTCTGTATC
CCTGGCTGTGCAGAGAGCTTTTGAGGAACTGGAGCCCTTGAGAGTCTTGA
ATGCTATCAGTCACAAAATCACACTTATGGATTACACCCCAGCTCTCCTT
GGAAGAATATCAACTCGTGGATGATGTAGTTGTGATTTCGACTCATTTGA
CTGTTCAAATCCAGGTGTTTTGGGTGTACTATATTTCTTTGTATTTGTGT
TATTTTTAGCTCAGTCCATTATGTACCTAAATATACAAATACACAGCACT
TGAGTCCAAACCCGAGCTGGAGACAATT
ATGCAGTGCGAGCCTGGCGGCGCCGGCCTTCAAAAAGAGGTGACCTATAG
AAGGATTCCCCGAATTCTCACATATGCCAGCTTTTGCTATGCAGACCTCG
CTCCTTAATGTAAAACTATTGGTTGAATACAGATGCCTACAGCCTAAAGC
TAGGCAGAAAGCAGCTAGACAGGGCTTCAGTTCCTGGGCTTGGAGTCTGA
GGCAGAGACCACAGGAGAAAAAAAGGAACTCTGAGAAGAAGAAAGGGGAC
GACACCTTCTGCCAGGAAACATGACAGGAGACAGACATTATGATGGGCCT
GAAGGTATAGCTAGCCCTGTGGATGGATGGGGCTAGGTGGTCAGGTTTAC
TTAGCTGAGCTAGTTGAGAGTCTGCCCAGCTATGGCCTAACCAAGTTTTC
AAATATTAAGAGGTTTCTGTTTGGTTATTGGGAACTAGCTGGTTAAGGAA
TAATTGCCGCTGTAATTTCCAGGATTAGTTATTATCTACAGAATATTAAT
AACCATTAATTTACACTGGACTTTTAAACATTTTTCAGGGGCAGAGATAT
GGTAGAGGACCCAAATTCTGTCCCCAGCACACACACTGGGAAGCTTACGA
CTTCCTGTGCCTCAAATTCTAAGGGGTTTAATTCCTTCTTCTGCTTTCCA
CAGGGGGTGCATGCACCCAGGGACTGGGACACACTCACCCGTACCACCGA
CCCCCTCAGATTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_b21.b1 MSMg01no125_b21.b1 CHROMAT_FILE:
MSMg01no125_b21.b1 PHD_FILE: MSMg01no125_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:03 2005
         (591 letters)



>mm_chr8_85562603_85563593
          Length = 991

 Score = 1143 bits (591), Expect = 0.0
 Identities = 591/591 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcaccaccatgatcccttatttcattcttaaatgttacacatgactaaactagcacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcaccaccatgatcccttatttcattcttaaatgttacacatgactaaactagcacaga 260

                                                                       
Query: 61  gctgtgtgaattaggagacattacttacaccatcacttctttaaggcagtttaaggaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtgtgaattaggagacattacttacaccatcacttctttaaggcagtttaaggaaat 320

                                                                       
Query: 121 ggtcttaatttcttcccatattctaaattagtttattttagcttagtctagtcttgtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcttaatttcttcccatattctaaattagtttattttagcttagtctagtcttgtctt 380

                                                                       
Query: 181 gtcttcttcagacagattctccctaggtaactcagactgatcttaaagttgtgatcctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcttcttcagacagattctccctaggtaactcagactgatcttaaagttgtgatcctcc 440

                                                                       
Query: 241 tgcctcagacttccaaggatccctgggattacagttatgcaccaccatactgcactgggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcctcagacttccaaggatccctgggattacagttatgcaccaccatactgcactgggg 500

                                                                       
Query: 301 atttcttatttaaggaccattgggaagagcccacctctgcacagtgatgcctgtcagtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttcttatttaaggaccattgggaagagcccacctctgcacagtgatgcctgtcagtcc 560

                                                                       
Query: 361 ttcacctctgtatccctggctgtgcagagagcttttgaggaactggagcccttgagagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcacctctgtatccctggctgtgcagagagcttttgaggaactggagcccttgagagtc 620

                                                                       
Query: 421 ttgaatgctatcagtcacaaaatcacacttatggattacaccccagctctccttggaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgaatgctatcagtcacaaaatcacacttatggattacaccccagctctccttggaaga 680

                                                                       
Query: 481 atatcaactcgtggatgatgtagttgtgatttcgactcatttgactgttcaaatccaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atatcaactcgtggatgatgtagttgtgatttcgactcatttgactgttcaaatccaggt 740

                                                              
Query: 541 gttttgggtgtactatatttctttgtatttgtgttatttttagctcagtcc 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttttgggtgtactatatttctttgtatttgtgttatttttagctcagtcc 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no125_b21.g1 MSMg01no125_b21.g1 CHROMAT_FILE:
MSMg01no125_b21.g1 PHD_FILE: MSMg01no125_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:03 2005
         (492 letters)



>mm_chr8_85721746_85722637
          Length = 892

 Score =  920 bits (476), Expect = 0.0
 Identities = 476/476 (100%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattctcacatatgccagcttttgctatgcagacctcgctccttaatgtaaaactattg 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 gaattctcacatatgccagcttttgctatgcagacctcgctccttaatgtaaaactattg 828

                                                                       
Query: 77  gttgaatacagatgcctacagcctaaagctaggcagaaagcagctagacagggcttcagt 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gttgaatacagatgcctacagcctaaagctaggcagaaagcagctagacagggcttcagt 768

                                                                       
Query: 137 tcctgggcttggagtctgaggcagagaccacaggagaaaaaaaggaactctgagaagaag 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tcctgggcttggagtctgaggcagagaccacaggagaaaaaaaggaactctgagaagaag 708

                                                                       
Query: 197 aaaggggacgacaccttctgccaggaaacatgacaggagacagacattatgatgggcctg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aaaggggacgacaccttctgccaggaaacatgacaggagacagacattatgatgggcctg 648

                                                                       
Query: 257 aaggtatagctagccctgtggatggatggggctaggtggtcaggtttacttagctgagct 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aaggtatagctagccctgtggatggatggggctaggtggtcaggtttacttagctgagct 588

                                                                       
Query: 317 agttgagagtctgcccagctatggcctaaccaagttttcaaatattaagaggtttctgtt 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agttgagagtctgcccagctatggcctaaccaagttttcaaatattaagaggtttctgtt 528

                                                                       
Query: 377 tggttattgggaactagctggttaaggaataattgccgctgtaatttccaggattagtta 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tggttattgggaactagctggttaaggaataattgccgctgtaatttccaggattagtta 468

                                                                   
Query: 437 ttatctacagaatattaataaccattaatttacactggacttttaaacatttttca 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ttatctacagaatattaataaccattaatttacactggacttttaaacatttttca 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)