BAC Information

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BAC

Clone NameMSMg01-125L24
Chromosome8 (Build37)
Map Location 64,085,979 - 64,086,351
singlet/doubletsinglet
Overlap genePalld
Upstream geneMfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4
Downstream geneLOC100040872, BC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125L24.T7 (MSMg01no125_l24.b1)MSMg01-125L24.TJ (MSMg01no125_l24.g1)
ACCAG334758AG334759
length727708
length of high quality
(start - end)
364 (71 - 434)369 (75 - 443)
definitionCHROMAT_FILE: MSMg01no125_l24.b1 PHD_FILE: MSMg01no125_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:53 2005CHROMAT_FILE: MSMg01no125_l24.g1 PHD_FILE: MSMg01no125_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAAGGCGCGGA
ATTCAGAGCTCTGTTCCTCTCTGTGGAGTTCAGAAGATCCCTGATAAGGA
GAGCGCTGAGTGACCATGTTCCCAGGGAACTCAGCAAGCCTCGGGCCTTC
TCAGCAGCCACATTAGATGCTAAGAGACCATGAAGCAAAAGCTTGAAATG
CAAAATTACCTCAAAGTTGGAATTCTACCCAGGTCTCCAGATCTGTGTGA
AGATCTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAATTATT
CCCAGACTTAGCAAAGCCTCAAAAGTGTTCTGCCACAATCCCCAAAGGAG
GGTGTTCTCAACCACAACCAGGGAGCTGAACCAGAAGGAGCAAGATGCAA
ATGTGGAGAACAGGAAGCAGGGATCGAAGGGAACCTGGAAGAGAATGCCA
GCTGTGCACCAGGAAGGAGGGCAGCCCCTCCCCCACACAGACACACCAGA
CTGCAGGGGGTGCATCAGGGACAGCCCACTGAGGTTGGCTGCACCGCAGG
CTTCACTCCCAGCTCCTTCCTGTCTTTTGCCCTGATGACAGAATGGTTGG
TTGACAGTGTCAGTTTCTCCTGTTTCCCTGTCCTGAGCTCTCATTCATGG
ACTGACACATGATCTCAAAAGATACTCATGTTTCCCACAGACATGGTCCA
TGTTGCCCTGGCCCTGAAACCTGGGAT
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCCCAAAGTGTGTATTTCACACCGC
TGCTTTTCTCATGTAATAAGGTATGTATTAAAAAAGAAAGAAAGAAACCA
ACCCCAGGTAAACGGTAAAATAACCCAAACCCTCAATCCTTCTCACCCCA
GGCTACTTAATTAAAGGTTAATGGCAGCATCCTGCCACTTAGCTCTGGCT
GACAGAGTGTGATTTGGTTTGGTTTTCAACTTTCTCCATGCCAAATGTTC
CAGCTAATACTTTAAGAAAATATGTATTACAGGCTTAAGTGGCTCTGCCA
ACACATAAAGTAAAGGTCTGTGCTCCTAACCAAAGGAGACACATTTCCAA
TGAATTCTGTCTCCCTTGCTCTCTGGAGTTGAGAACAGCCAGGCATCCGA
AGCAAGCGTGGAAGAATCCTTCCTGGCCTCTCAGCTTGGATGTGTATGGA
AAAAAGCTCCCCGCTCTGCATTCCCTATTTAAGAAAGAACCTGCCCCAGC
CCCATCCAATAAAACAGAGTAGTGTTTCCTTACGTATAAACAACCGAGAA
ATTCCTCCCAAGCCAGCACACAGCCTTTTGGGTCTTGGAACAAAGCGGCC
GGTGGTATTTATTATGCCAAACAAACACTAACTCCCTACTGCAAAGGGTG
AAACTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_l24.g1 MSMg01no125_l24.g1 CHROMAT_FILE:
MSMg01no125_l24.g1 PHD_FILE: MSMg01no125_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:53 2005
         (369 letters)



>mm_chr8_64085779_64086551
          Length = 773

 Score =  671 bits (347), Expect = 0.0
 Identities = 365/373 (97%), Gaps = 4/373 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   accccaaagtgtgtatttcacaccgctgcttttctcatgtaataaggtatgtattaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accccaaagtgtgtatttcacaccgctgcttttctcatgtaataaggtatgtattaaaaa 260

                                                                       
Query: 61  agaaagaaagaaa----ccaaccccaggtaaacggtaaaataacccaaaccctcaatcct 116
           |||||||||||||    |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 agaaagaaagaaagaaaccaaccccaggtaaaccgtaaaataacccaaaccctcaatcct 320

                                                                       
Query: 117 tctcaccccaggctacttaattaaaggttaatggcagcatcctgccacttagctctggct 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcaccccaggctacttaattaaaggttaatggcagcatcctgccacttagctctggct 380

                                                                       
Query: 177 gacagagtgtgatttggtttggttttcaactttctccatgccaaatgttccagctaatac 236
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagagtgtgatctggtttggttttcaactttctccatgccaaatgttccagctaatac 440

                                                                       
Query: 237 tttaagaaaatatgtattacaggcttaagtggctctgccaacacataaagtaaaggtctg 296
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaagaaaatatgtagcacaggcttaagtggctctgccaacacataaagtaaaggtctg 500

                                                                       
Query: 297 tgctcctaaccaaaggagacacatttccaatgaattctgtctcccttgctctctggagtt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctcctaaccaaaggagacacatttccaatgaattctgtctcccttgctctctggagtt 560

                        
Query: 357 gagaacagccagg 369
           |||||||||||||
Sbjct: 561 gagaacagccagg 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 773
Length adjustment: 9
Effective length of query: 360
Effective length of database: 764
Effective search space:   275040
Effective search space used:   275040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)