BAC Information

Click to search

BAC

Clone NameMSMg01-126I14
Chromosome8 (Build37)
Map Location 115,778,770 - 115,779,086
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042040, Cntnap4, LOC100042061
Downstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7, AI427515
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126I14.T7 (MSMg01no126_i14.b1)MSMg01-126I14.TJ (MSMg01no126_i14.g1)
ACCAG335324AG335325
length688714
length of high quality
(start - end)
324 (44 - 367)39 (76 - 114)
definitionCHROMAT_FILE: MSMg01no126_i14.b1 PHD_FILE: MSMg01no126_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:58 2005CHROMAT_FILE: MSMg01no126_i14.g1 PHD_FILE: MSMg01no126_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGAGGATCCGCGG
AATTCATACAAGACAAATAAGCAATTACTACATGAGGATAAAAATGTTTG
ACTCAAAACCAAAACATTCTTATCAAATGCCTGTGCATATGAGGAGGTGC
ATGTGTTTTTGTGTGTGTGCATGCCCATGTGCCTGTATGTATATGCATGT
ATGTGTGTTTGTGTATTTTTTTGTATGCATTGTGTGTTATCCATGAGGCC
TGTATGGGAATCAGGGGACAGTTTGAGAACTCAAAATTTCAGATTTTCTA
GGCAAAAATGTCTTCATCATTTGAGACATCTTGCTGGCCTTATATCTAAA
TATTCAGACATTCTCTTCTCATCAATTCATGATTTACACAGAAATCTGTA
AGGACATACAACACCCCCATGCCCAATTTGGCCCAAATGGTATCTATTGA
AAAGTATGCTCATTATGCCCTACCACCGTATCCTCAACTGTATATATCTG
CATAGAACATTCTACAAATCCACTATAATATCTCCTGAATCTCTTAAATA
TAGTACTGTGAGTACACGATCAGCACTAACAAATTAATGGCATTTTCCCT
CACCAGCGGCTAACTCAAATTTATTATTTTCTTTCATACTAGCCTATCCT
GATGCCTATTTATCCCATCTAACTATACCACTTACCTA
CGATGCAGTGGGAGGCCTGGCGGCCGCCTGTTTCCGACCTGAGGNGAACT
ATAGAAGGTTACGNGACTTAGCAGACACTAAGGAAGAGTGGGGGGTGGGG
GGGCTGACACCAGGCAGCCCCACCCCAGAAGAGAAACAGGGGGCGAGCCC
CACCACCAAAGGAGGGANNCGGAGGCAAAACGGAGCCACACCAAACAAAT
CGCGANTAGGCAATACTAAGTATAAAGTAACGGGCTGCGCTGCGACACCT
TCATTTTTGTACACCACGTATCTGATATTATTCATTCCTCCCTGTATGTA
CACCAGCGCCCCCAACACTTTTTTTTTTTTTCACCGAACCCAACAGGGCC
CCAGAGAAAAATCACAACCCCCCCCCGTCACAGCCGACCAACTTCCATCC
CTTTCTTCCGCTCCCCCCCCCCCCTTCTTATGTAATTCCACCCCTTTCTT
GTCTCCCCTGCCCTCCATTCGTTCTTTATCCACCCTATCCCACTTCATTC
CCGTCTACATCTCCTTTATCCATATACCTACCCTACCCATTCATACCTCT
TCCCCTTCCCCTACTTTCCTTTTTTCCCCCTCCCCCCTCTCGTCTTTTTT
CCCTTACCATTATTACCCGTTAATCCCCCTTTTTATCTTTCTCACCTACT
CTCCTCTTCACATTACTTCTTCTTTTTCTTTCTCCGTTACATCTACTTTT
CTCCCCCCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_i14.b1 MSMg01no126_i14.b1 CHROMAT_FILE:
MSMg01no126_i14.b1 PHD_FILE: MSMg01no126_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:58 2005
         (324 letters)



>mm_chr8_115778563_115779286
          Length = 724

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%), Gaps = 1/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcatacaagacaaataagcaattactacatgaggataaaaatgtttgactcaaaac 66
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcatacaagaaaaataagcaattactacatgaggataaaaatgtttgactcaaaac 267

                                                                       
Query: 67  caaaacattcttatcaaatgcctgtgcatatgaggaggtgcatgtgtttttgtgtgtgtg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 caaaacattcttatcaaatgcctgtgcatatgaggaggtgcatgtgtttttgtgtgtgtg 327

                                                                       
Query: 127 catgcccatgtgcctgtatgtatatgcatgtatgtgtgtttgtgtatttttttgtatgca 186
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 328 catgcccatgtgcctgtatgtatatgcatgtatgtgtgtttgtgtatttttt-gtatgca 386

                                                                       
Query: 187 ttgtgtgttatccatgaggcctgtatgggaatcaggggacagtttgagaactcaaaattt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttgtgtgttatccatgaggcctgtatgggaatcaggggacagtttgagaactcaaaattt 446

                                                                       
Query: 247 cagattttctaggcaaaaatgtcttcatcatttgagacatcttgctggccttatatctaa 306
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 447 cagattttctaggcaaaaatgtcttcatcagctgagacatcttgctggccttatatctaa 506

                             
Query: 307 atattcagacattctctt 324
           ||||||||||||||||||
Sbjct: 507 atattcagacattctctt 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)