BAC Information

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BAC

Clone NameMSMg01-127A19
Chromosome8 (Build37)
Map Location 16,315,884 - 16,316,170
singlet/doubletsinglet
Overlap geneCsmd1
Upstream geneEG234097, EG665619, LOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127A19.T7 (MSMg01no127_a19.b1)MSMg01-127A19.TJ (MSMg01no127_a19.g1)
ACCAG335702AG335703
length719718
length of high quality
(start - end)
361 (38 - 398)291 (67 - 357)
definitionCHROMAT_FILE: MSMg01no127_a19.b1 PHD_FILE: MSMg01no127_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:40 2005CHROMAT_FILE: MSMg01no127_a19.g1 PHD_FILE: MSMg01no127_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATA
TGCTTTCATAACCAGGAACTAGATAGCCCAGGGATCTAGGTTGAAACCAA
GTGCTACTGTTCTAAAGGAACGTAGCAATAAAATGACTTCCAGTGACATT
CTGCTATACTCATAGGTTAGCGCCTTGATCAGCCATCACCAGAGGAGCTT
CTTCCTGTACAGATAGAAACAAATACAGAGACCCACACCCAGACAATATG
CAGGGAGTGAAAGACCCTGGAACACTCAGCCCTAAATAGGATGTCTCCAC
CAAATTCCTCCCCTCAGGGCTCAAGTCACTGTGGAAGAGGAAGCAGAATG
CAGGACACAAAGAAAACAAGGCACTCAAAACAGAGCAAGAGCCGGGCGGT
GTTGCCCCACTCCTTTAATCCCAGCGCTTGGGAGGCAGAGGCAGGCGGAT
TTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCA
GGGCTACACAGAGAAACCCTGTCTGGAAAAGCCAAACCAAACCAAACCAA
AAACACAGCAAGACTGATGCACACACAGAGACTGAGGTAGCATGCACTGG
GCCTGTGCAGCAAATGAGGTCCTAGAACTGATTAGATAATGAGACATAAT
GTATCCATCCCTAACCTGGGCGCTGCCTTCAATTTATCGCCACTTACAAA
TGACATTTTATTGCTTCCC
TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTCTTTCTTGCCTTTCTTTCTTATTGGTTCCT
GTGGGAGTTAGCCCCCTTTCTGCTGCAATAATCCTTCAGTGCTCAGTCAG
TAATGTCTGGACTCCTTTTAGATTCTCATAGGGCCAGTGATTTTACTTGT
GTCAAGGTCACATACACACTGTGTGATTAGGAAATTAGAAAGGGAGAATT
GAGAGCCACAGATGTAGACTAACACAGTGCCTGTGAGTGAATTGTGGCAG
GGTACATCCTCTGTGGGGATGCTGCCCTTCACAGACATTTGATTGAGTGT
TTTATATGCACCTGGCCCAGAAAGTACCAAGCTTTGGCAACAATCTGTCA
GACACCCGCTTAACCACTTCAACAAACTTAAAGATTGGTATAGTTTAAAC
ATGGCAGAGGGCTGGCTATACTACTTTGATCTCATACTAGGTTGAAGGTT
GGAAAAAAATCTATGCAGAGAAAAATTACACTTTGGATATATTTTATATT
TGAAAATAGATGATTCTTTCCAATTAACTCTCTCTGTGATGGCTTTATAT
TTTATGACAATTTATATGCATGCTATATAAAATGTAGGGAAATGGTTGGG
GTGCATTCTGCCTGGTAAAGAGCTTATCTAGAAGAATAAGGTCCTGGTCT
TCATCCCAGAACTGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_a19.g1 MSMg01no127_a19.g1 CHROMAT_FILE:
MSMg01no127_a19.g1 PHD_FILE: MSMg01no127_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:40 2005
         (291 letters)



>mm_chr8_16315684_16316370
          Length = 687

 Score =  493 bits (255), Expect = e-144
 Identities = 281/291 (96%), Gaps = 4/291 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttctttcttgcctttctttcttattggttcctgtgggagttagccccctttctgctgc 60
           |||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct: 487 ttttctttcttgcctttctttcttattggttcctgtgggagtgagactcctttctgctgc 428

                                                                       
Query: 61  aataatccttcagtgctcagtcagtaatgtctggactccttttagattctcatagggcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 427 aataatccttcagtgctcagtcagtaatgtctggactccttttagattctcatagagcca 368

                                                                       
Query: 121 gtgattttacttgtgtcaaggtcacatacacactgtgtgattaggaaattagaaagggag 180
           |||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||
Sbjct: 367 gtgattttacttgtgtcaaggttacatacaca--gtgtgattaggaaattagaaagggag 310

                                                                       
Query: 181 aattgagagccacagatgtagactaacacagtgcctgtgagtgaattgtggcagggtaca 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 309 aattgagagccacagatgtagactaacacagtgcccgtgagtgaattgtggcagggtaca 250

                                                              
Query: 241 tcctctgtggggatgctgcccttcacagacatttgattgagtgttttatat 291
           |||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tcctctg--gggatgctgcccttcacagacatttgattgagtgttttatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 687
Length adjustment: 9
Effective length of query: 282
Effective length of database: 678
Effective search space:   191196
Effective search space used:   191196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)