BAC Information

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BAC

Clone NameMSMg01-129E20
Chromosome8 (Build37)
Map Location 52,610,329 - 52,696,766
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039966, LOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129E20.T7 (MSMg01no129_e20.b1)MSMg01-129E20.TJ (MSMg01no129_e20.g1)
ACCAG337346AG337347
length717718
length of high quality
(start - end)
317 (46 - 362)291 (69 - 359)
definitionCHROMAT_FILE: MSMg01no129_e20.b1 PHD_FILE: MSMg01no129_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:39 2005CHROMAT_FILE: MSMg01no129_e20.g1 PHD_FILE: MSMg01no129_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,610,329 - 52,610,641)(52,696,476 - 52,696,766)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTAAACTTACAGAAAATGTTGCAGCAAAGTGAATATTGAAAGCT
TTGCAGGAAGTTTTCTTCTTTACTTTCATATCCCTTACACATTTCCCCCA
TTGTTTCAATAAATATCAACTATGTATTCAATTGCTGCCTGAAATCATCA
CATTTATTTTACCTCTTCTTTTTGTCTTTCACATAATACAGCTGGTATGA
ACAATTTGTATTGATCCTGTCATCAACATATGCACAGTAACCTACTTTTG
GTATAGCTTTAGTTTCATTATTCACACTATAGTCAACATAGAGTCAATAT
GGGAAATACAGTATTTTGTGTGCGTCTGCTCACGGGTCTTTCACACTTAT
AATTCATATAACATAATAAATTTACCAAATAACATTTTTAGTCCATTACA
CTTCTCCTACTATGTGCTTTTGAAAATTAGCCCAAATACTGTGTAGAATG
TATCTGTATCAAACATTATTGTTATCAGTTATGGTAATAATGATGAACTT
CAGAGAGTCCAGTTCAGTGCCATCCAGATCTCATACCTGGTTAATCTTAA
TAATATAAATTGCTGCGGATCACGGAAGGCATTAATAGCGATATAATTTC
CTAAGGAAGACTATCACACCTAACTAGCCTGGACCTTTGAGAGCTCTCAG
ATACTGAACCACCCATT
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTATTCCTTAACTTTTATCTCAAAGCTTTAAC
CAAAGGCTTAGAAATTGGCCAAACTATTACATTTTATTTCCATTTTCACC
TTTTAACTTAAAGTAATTCAAACATTCAAATGCTGCTTGGTTCTTTTATT
CATCTTTGTGAGTGAAGAATTCTGTGCCTTATGCAAATACTATCATCTCT
TATATAGAACAGATAATATGAATAGCAGTTTTCAATCTGTGTGTTGATTA
CTAGATTTTGACAACAAAATTTATGGTCAGTATAAATTGGAAAGAGAGAC
TAAAAACTGTTATTTTACACCCGCCGCGGAGATATCAATTGTACCAGATT
TATACATTTATGAAGACAATCTTTAAATATAAGACTAACAGGTATTATTG
ATTTAAACTGCACATAAATGTAGTCATTATATATATATATAATGTGTGTG
TATACTCTCCTCTCCTCCACCCAGAACCCTCCCTCCCTCTGCCTCCCTTG
ACTATTGTATTCCTCTTTCTAAGAGGGCTTTAAGCATCCTCACTTGGGCC
TTCCTTCTTGTTTAACTTTTCTAGATGCGTGAGACTTATCATGTGTATTC
TGTACTATCTGGATAATATACACTTATAGTGAGTACTTACCATGCATATC
CATTTTCGTTTAAGTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_e20.b1 MSMg01no129_e20.b1 CHROMAT_FILE:
MSMg01no129_e20.b1 PHD_FILE: MSMg01no129_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:39 2005
         (317 letters)



>mm_chr8_52610125_52610841
          Length = 717

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaaacttacagaaaatgttgcagcaaagtgaatattgaaagctttgcaggaa 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaaagttacagaaaatgttgcagcaaagtgaatattgaaagctttgcaggaa 264

                                                                       
Query: 65  gttttcttctttactttcatatcccttacacatttcccccattgtttcaataaatatcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttttcttctttactttcatatcccttacacatttcccccattgtttcaataaatatcaa 324

                                                                       
Query: 125 ctatgtattcaattgctgcctgaaatcatcacatttattttacctcttctttttgtcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctatgtattcaattgctgcctgaaatcatcacatttattttacctcttctttttgtcttt 384

                                                                       
Query: 185 cacataatacagctggtatgaacaatttgtattgatcctgtcatcaacatatgcacagta 244
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacataatacaggtggtatgaacaatttgtattgatcctgtcatcaacatatgcacagta 444

                                                                       
Query: 245 acctacttttggtatagctttagtttcattattcacactatagtcaacatagagtcaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acctacttttggtatagctttagtttcattattcacactatagtcaacatagagtcaata 504

                        
Query: 305 tgggaaatacagt 317
           |||||||||||||
Sbjct: 505 tgggaaatacagt 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no129_e20.g1 MSMg01no129_e20.g1 CHROMAT_FILE:
MSMg01no129_e20.g1 PHD_FILE: MSMg01no129_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:40 2005
         (291 letters)



>mm_chr8_52696276_52696966
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattccttaacttttatctcaaagctttaaccaaaggcttagaaattggccaaactatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 491 ctattccttaacttttatctcaaagctttaaccaaaggcttagaaattgggtaaactatt 432

                                                                       
Query: 61  acattttatttccattttcaccttttaacttaaagtaattcaaacattcaaatgctgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acattttatttccattttcaccttttaacttaaagtaattcaaacattcaaatgctgctt 372

                                                                       
Query: 121 ggttcttttattcatctttgtgagtgaagaattctgtgccttatgcaaatactatcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggttcttttattcatctttgtgagtgaagaattctgtgccttatgcaaatactatcatct 312

                                                                       
Query: 181 cttatatagaacagataatatgaatagcagttttcaatctgtgtgttgattactagattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cttatatagaacagataatatgaatagcagttttcaatctgtgtgttgattactagattt 252

                                                              
Query: 241 tgacaacaaaatttatggtcagtataaattggaaagagagactaaaaactg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgacaacaaaatttatggtcagtataaattggaaagagagactaaaaactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)