BAC Information

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BAC

Clone NameMSMg01-130M05
Chromosome8 (Build37)
Map Location 67,468,268 - 67,468,493
singlet/doubletsinglet
Overlap genenone
Upstream geneTll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647
Downstream gene3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130M05.T7 (MSMg01no130_m05.b1)MSMg01-130M05.TJ (MSMg01no130_m05.g1)
ACCAG338434AG338435
length703708
length of high quality
(start - end)
290 (69 - 358)231 (126 - 356)
definitionCHROMAT_FILE: MSMg01no130_m05.b1 PHD_FILE: MSMg01no130_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:43 2005CHROMAT_FILE: MSMg01no130_m05.g1 PHD_FILE: MSMg01no130_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACAATTTGCGGCGCTAAACGACTACTATAGTCAGAAATGCGCGGAATTC
CAGAGATTTTCTCACTGTGGGTGCTGGGATTAAAGGCATACACCACCACA
CCCAGTGTATGTTCTATTCTCTTCATTTAATCATTTTTGGACATGATCTC
AAGTAGCCCAGGTCAAAGACTCTACCATATGAAGGGTGACTTTGAACTCA
CGATCCTCATGTCTTCTCCTCCCTAGTGCTGGTGTGCACCACTCAGTCTG
TTTTATGCAATGCTGGAAATTGGAGCCAGGTCTTTGTGCATGTTGGGCAA
GCATTCGACCTACTGTGTTTTTTTCCCAGCTCCTGCAATGGTACCTTCAT
CCCATGGTTTACAACTGCTCTCCCAGTAACTTGATATTTACTCATGTCTG
TAAAATACTTACCCCCCCGACTGAGATGGTTACAGGGACCCAAAATGCTG
GAAAAACTAATAATACATGAATTGGAAGATAGAAGAACCCTTACATTTAT
TCTCAAGTGAACCTATTGTCCCTGGAAAAGGCAAGAGAGGCCTGTGCTAC
TTGCTTTTTGTTCTTCTACGTTTGTTCACGTTTATTTTCTCACCCTCTTC
TCCTATTGCTATGATTAAAATAAAATACTCTGATTATTACCTATTTACCC
TGGCTCTCACGTGCACCCCATTATGGGTTATTACCCCTGCATTATCCCAC
TGC
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCTGAAATTAAAGGTCATCCTGTCAACTACACAACAAGTT
CAAGGCCAGCCGGATTTCTCCGCCAGTCTGTGCTGAAAAAGAAGAAAAAC
CTAGGAAGAGATGACAAGACAGGGAAAGGGATAGGTGGCAAGAAGGAAGG
AAGGAAGGAAGGAAGGACAGACAGGAAATACACAAACAATGAGAGGGTGG
TTGCCAATCTGACGTCCTCAGCCTTCCCGGCCTATTTCACGTCCTCTCAG
CGACCTGCACACACACGCCCTGTTTGTTCTGTTCCTTACCACGGCTCTCA
TCTCACCTTTTCTTATGCTCGCCCCCCCCCTCANAAGNAACCTGTGTTTC
TTACCTGTCACGCACCCCCCGAACAAAAAAAAAAGGTCATCTGCGGCTAC
AGAAGGAATTGGAGGCCAGTCTAGGCTACATAAGACTCTGCCTCACACAC
TTTCGACACTAACAAAGTCCAACACAGGTAAACTAGATCTGAATCCAATT
TCACTCATCTTTCAAGCATGTCCAGATTTTTTGTCTTCGTTACTATTCCT
CTGTGGCCCGGGTCATTCGTGCCGTGCCGTAATAAATGGAGGTCGGTGTA
ACACTTGCTGTTCATATACTTTCCCCGTTTTTGCCCAACCCCCCTCATTC
CCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_m05.g1 MSMg01no130_m05.g1 CHROMAT_FILE:
MSMg01no130_m05.g1 PHD_FILE: MSMg01no130_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:43 2005
         (231 letters)



>mm_chr8_67468068_67468698
          Length = 631

 Score =  362 bits (187), Expect = e-104
 Identities = 217/227 (95%), Gaps = 2/227 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctgtgctgaaaaagaagaaaaacctaggaagagatgacaagacagggaaagggatagg 60
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 201 gtctgtgctgaaaaagaagaaaaacctaagaagagatgacaagacagggaaagggaaagg 260

                                                                       
Query: 61  tggcaagaaggaaggaaggaagga-aggaaggacagacaggaaatacacaaacaatgaga 119
           |||||||||||||||||||| ||| || |||||||||||||||||||||| ||||| |||
Sbjct: 261 tggcaagaaggaaggaaggacggacag-aaggacagacaggaaatacacagacaatcaga 319

                                                                       
Query: 120 gggtggttgccaatctgacgtcctcagccttcccggcctatttcacgtcctctcagcgac 179
           |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 gggtggttgccaatctgatgtcctcagccttcctggcctatttcacgtcctctcagcgac 379

                                                          
Query: 180 ctgcacacacacgccctgtttgttctgttccttaccacggctctcat 226
           ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgcacacacaggccctgtttgttctgttccttaccacggctctcat 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)