BAC Information

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BAC

Clone NameMSMg01-131O07
Chromosome8 (Build37)
Map Location 125,976,715 - 125,977,195
singlet/doubletsinglet
Overlap geneDef8
Upstream geneSnai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3
Downstream geneAfg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131O07.T7 (MSMg01no131_o07.b1)MSMg01-131O07.TJ (MSMg01no131_o07.g1)
ACCAG339277AG339278
length707715
length of high quality
(start - end)
481 (124 - 604)185 (132 - 316)
definitionCHROMAT_FILE: MSMg01no131_o07.b1 PHD_FILE: MSMg01no131_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:15 2005CHROMAT_FILE: MSMg01no131_o07.g1 PHD_FILE: MSMg01no131_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGATGAGGATCCGCG
GAATTCAGGATTGCTGAAAAAGAGTGGGGCGGGGAGGACACTGGAGAGAT
GGCTCAGAGGTTAATAGCACCGACTGCTCTTCTGAGTTCAATTCCAGAAA
CCACATGGTGGCTCACAACCATCTTATAATGGGATCTGATGTCCTCTTCT
GGTGTGTCTGAAGACAGGTACAGTGTACTTATGTATATATAATATTAAAA
TAAAAAAATACAGGATTCCTGACATCATTAGAAGCCCCTACCCCCAACCC
CAAATGGTTAACAAAACAATGGTTTCTTCTTTTGCCTTTAAGGGCCCTAA
GATTGGGTTTCTGTCCCTCACAATCAAGGGGGGCTGTACTGTCAGGGAAG
TAGCTAGCCTAACTTTCACTCTGCTTTTCTGTCCCTACCTGAGCCTCTCA
AAGACCACAGAAGGACAGCTCCCTGTCCCCTGCCTCCATGCGGCGCCGCG
GGCAGGTCAGAGGTCTGAACCCACCTTCAGCTCTTGGAGCTTCAGCCGGA
GGTGGATCAGCCGCACCACAGCGTCCTTCTGCTTCTCTGACTGCTCGGGC
AGCTCCAGGATCACCTGTTTGCATTCTTCGATGGCCTGCCGCAGCTGCTG
GACATCCGAGGCCAGGAAGAAACCCTGCCCGGGTTTGTAAGCAGCAATCC
AATGAAC
CATCGATGCTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTGACACAAAAAATTCACCATGTAACCTCAAACTCAAGAG
ATCTACCTACTTTGCTTTCTGTCTGCTAACATTAAAGGCATATGTCATAA
CATTTCAGCTTACATTTATTATTTTTTTAAATTTATTTTTATTTTATGTA
TATGGGTGTTTTGTCTGCCTGTATGCTTGCACACCAGAAGAGAGCATCAG
ACCCCATTACAGATTGTGAGCCACTACATGGGTGTTAGGGCTTGAACTCA
AGACCTCTGGAAGAGCATGTTTTCTTCTGAGCAGCTGAGCCATCTCTTCA
GCATTAATATTTTTTTTCACCCCCCCCCCCCCCTGGAGAGATGGCTCAGC
GGTTAAGGGCGCTGACTGCTCTTTCAAAAAACATGAGTTCAATTCCCAGC
AATCATATGGTGGCACATAGCCATCTGTAATGGGATCTGATGTCCTTGTC
TGGTGTGTCTGAAGAGAGCCACAGTGCACTCTTAGAAACGAAATATAAAA
ATATGTAAAAAGAATAAAAACTAAAATATAAGTAGATGCCCCACAACATA
GTTGACTCTGACCTAAAACGACAGTATCAAGACTTCCTGATGACTCAATT
TGAACGGGCCTTTGTACCCCGGCCCGACAACCTGATATCACTCATATGCT
CGCCCTATATTGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_o07.b1 MSMg01no131_o07.b1 CHROMAT_FILE:
MSMg01no131_o07.b1 PHD_FILE: MSMg01no131_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:15 2005
         (481 letters)



>mm_chr8_125976379_125977259
          Length = 881

 Score =  915 bits (473), Expect = 0.0
 Identities = 479/481 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctcttctgagttcaattccagaaaccacatggtggctcacaaccatcttataatggg 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 817 ctgctcttctgagttcaattccagcaaccacatggtggctcacaaccatcttataatggg 758

                                                                       
Query: 61  atctgatgtcctcttctggtgtgtctgaagacaggtacagtgtacttatgtatatataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 atctgatgtcctcttctggtgtgtctgaagacaggtacagtgtacttatgtatatataat 698

                                                                       
Query: 121 attaaaataaaaaaatacaggattcctgacatcattagaagcccctacccccaaccccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 attaaaataaaaaaatacaggattcctgacatcattagaagcccctacccccaaccccaa 638

                                                                       
Query: 181 atggttaacaaaacaatggtttcttcttttgcctttaagggccctaagattgggtttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 atggttaacaaaacaatggtttcttcttttgcctttaagggccctaagattgggtttctg 578

                                                                       
Query: 241 tccctcacaatcaaggggggctgtactgtcagggaagtagctagcctaactttcactctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tccctcacaatcaaggggggctgtactgtcagggaagtagctagcctaactttcactctg 518

                                                                       
Query: 301 cttttctgtccctacctgagcctctcaaagaccacagaaggacagctccctgtcccctgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cttttctgtccctacctgagcctctcaaagaccacagaaggacagctccctgtcccctgc 458

                                                                       
Query: 361 ctccatgcggcgccgcgggcaggtcagaggtctgaacccaccttcagctcttggagcttc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 457 ctccatgcggcgccgcgggcaggtcagaggtctgaacccaccttcagctcctggagcttc 398

                                                                       
Query: 421 agccggaggtggatcagccgcaccacagcgtccttctgcttctctgactgctcgggcagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agccggaggtggatcagccgcaccacagcgtccttctgcttctctgactgctcgggcagc 338

            
Query: 481 t 481
           |
Sbjct: 337 t 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)