Query= MSMg01no132_c09.b1 MSMg01no132_c09.b1 CHROMAT_FILE:
MSMg01no132_c09.b1 PHD_FILE: MSMg01no132_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:35 2005
(658 letters)
>mm_chr8_111618890_111619943
Length = 1054
Score = 1141 bits (590), Expect = 0.0
Identities = 638/656 (97%), Gaps = 8/656 (1%)
Strand = Plus / Plus
Query: 5 gaattcagtgcctgtaccgatacttgtctattttattagtaggaggctcagtctctcatg 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgcctggactgatacttgtctattttattagtaggaggctcagtctctcatg 264
Query: 65 tcctcccccccccaccccgatttaggtcaccttttcttgccagctaagaaattaatgtct 124
| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 t-ctcccccccc--cccc-atttaggtcaccttttcttgccagctaagaaattaatgtct 320
Query: 125 ttgttgggatcattgcacgtcgacttgataacagcagtgctgttattgaggcagctgaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttgggatcattgcacgtcgacttgataacagcagtgctgttattgaggcagctgaca 380
Query: 185 cagtgattggctaaataccgcctctttagcagaggcaaagccattattgattcctggtgg 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgattggctaaataccgcctcttcagcagaggcaaagccattattgattcctggtgg 440
Query: 245 attctgggaacctgttgcactccctagtcttttgtccttagaaagcttccatttgtacac 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 attctgggaacctgttgcactctctagtcttttgtccttagaaagcttccatttgtacac 500
Query: 305 cttggtatggaactctttgtggtgggaacattttccacaggtattttcatatcatacaaa 364
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttggtacggaactctttgtggtgggaacattttccacaggtattttcatatcatacaaa 560
Query: 365 cctcctagttttctggcacacagttgaaactctagaaagttagctacgtgaatttggcgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 cctcctagttttctggcacacagttgaaactctagaaagttagctacgtgaatttggtgg 620
Query: 425 ggtttgacttattcttggcagttttatatatgacttatgtagttcattcaagttctggct 484
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 ggtttgacttattcttggcagttttatatatgacttatgtagttaattcaagttctggct 680
Query: 485 atccagaaatagtaggctggcaacaaatatatgtgactattctgtgaatcctctggctag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atccagaaatagtaggctggcaacaaatatatgtgactattctgtgaatcctctggctag 740
Query: 545 tgttagggactagccgaaatgaactctgggaagtttattttgtgccgtgac--gcgagaa 602
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 741 tgttagagactagccgaaatgaactctgggaagtttattttgtgccgtgacatgcga--a 798
Query: 603 aagaaaaatgtgcaaatcctgcgtggtgagtggttagaatcacgaggcatttacac 658
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 799 gagaaaaatgtgcaaatcctgcatggtgagtggttagaatcacgaggcatttacac 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1054
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1044
Effective search space: 676512
Effective search space used: 676512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_c09.g1 MSMg01no132_c09.g1 CHROMAT_FILE:
MSMg01no132_c09.g1 PHD_FILE: MSMg01no132_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:35 2005
(622 letters)
>mm_chr8_111770847_111771868
Length = 1022
Score = 1195 bits (618), Expect = 0.0
Identities = 621/622 (99%)
Strand = Plus / Minus
Query: 1 ttaccgaggacaagcgcctcactacagctcatgggacaaacaggttcattaggagacagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ttaccgaggacaagcgcctcactacagctcatgggacaaacaggttcattaggagacagc 763
Query: 61 tctgagcggctacggcattttggtattttgattttttttttccccttagtttaaacgaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tctgagcggctacggcattttggtattttgattttttttttccccttagtttaaacgaag 703
Query: 121 agtcagacagatgtgccttctttgcatgagagcattgagatggatccaatctgtgaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 agtcagacagatgtgccttctttgcatgagagcattgagatggatccaatctgtgaaatt 643
Query: 181 tgctgcccaaatagcatttctaatggaacctgggactaaacaagggcttggatgtggaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tgctgcccaaatagcatttctaatggaacctgggactaaacaagggcttggatgtggaag 583
Query: 241 ggaggggagaagagagaacccacgaagaggaggctactcagccactgcgaggcttttggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggaggggagaagagagaacccacgaagaggaggctactcagccactgcgaggcttttggt 523
Query: 301 agcacaggaagctgtcagaagccatctttgctccactggtcccaggtgtgggctccagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agcacaggaagctgtcagaagccatctttgctccactggtcccaggtgtgggctccagat 463
Query: 361 ccagagagccatcagggttcaccaagatgaacactgagcgggcccttgtaggtctgaggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ccagagagccatcagggttcaccaagatgaacactgagcgggcccttgtaggtctgaggc 403
Query: 421 agaggaaagcggcaacagcagcagcggctcggtgcctacccccctaccccctcagtggtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agaggaaagcggcaacagcagcagcggctcggtgcctacccccctaccccctcagtggtc 343
Query: 481 ttcagcccagaagccaaaagcacagctactcctttgggatgcagtagattgcctcctggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttcagcccagaagccaaaagcacagctactcctttgggatgcagtagattgcctcctggt 283
Query: 541 ccaggtatttgtggaagaaggaatatcttggtgctatcgaagagtgcgttgctaaagagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccaggtatttgtggaagaaggaatatcttggtgctatcgaagagtgcgttgctaaagagc 223
Query: 601 agatggcatcatccgctgctta 622
||| ||||||||||||||||||
Sbjct: 222 agacggcatcatccgctgctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
