Query= MSMg01no132_f12.b1 MSMg01no132_f12.b1 CHROMAT_FILE:
MSMg01no132_f12.b1 PHD_FILE: MSMg01no132_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:50 2005
(318 letters)
>mm_chr8_88784218_88784935
Length = 718
Score = 484 bits (250), Expect = e-141
Identities = 283/312 (90%), Gaps = 28/312 (8%)
Strand = Plus / Plus
Query: 7 ggaattccacagcctttcctctctaaggacacgatctcaaattcctccacaaccaagcat 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattccacagcctttcctctctaaggacacgatctcaaattcctccacaaccaagcat 266
Query: 67 ctgtcatcctcctactctccattcaaacatctccgtgtctgggaaacatttctggacacc 126
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctgtcatcctcctagtctccattcaaacatctccgtgtctgggaaacatttctggacacc 326
Query: 127 atgtgctccagcatcaggcacacacacacacacacacacacacacacacacacacacaca 186
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atgtgctccagcatcaggcacacacacacacacacacacacacacaca------------ 374
Query: 187 cacacacacacacacaaatcctctagttcatttaatgactgtattcttacgaatgaaatt 246
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ----------------aatcctctagttcatttaatgactgtattcttacgaatgaaatt 418
Query: 247 aaatttttcttgagatcaattctctgaaagtcaatatacccttggggagtaaccaagttt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aaatttttcttgagatcaattctctgaaagtcaatatacccttggggagtaaccaagttt 478
Query: 307 gttttcagggtt 318
||||||||||||
Sbjct: 479 gttttcagggtt 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_f12.g1 MSMg01no132_f12.g1 CHROMAT_FILE:
MSMg01no132_f12.g1 PHD_FILE: MSMg01no132_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:50 2005
(530 letters)
>mm_chr8_88831880_88832809
Length = 930
Score = 766 bits (396), Expect = 0.0
Identities = 396/396 (100%)
Strand = Plus / Minus
Query: 135 gatactcatcacaacctatgagctggaagtagcttagttagtagagcatttttctagcat 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 gatactcatcacaacctatgagctggaagtagcttagttagtagagcatttttctagcat 871
Query: 195 gcccaaggccctgagttctagccccagcactgacaaaaagcactcctgtaacccagcact 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gcccaaggccctgagttctagccccagcactgacaaaaagcactcctgtaacccagcact 811
Query: 255 caagaaggcggcagaaagaccagaagttcaaagtcattattggcttcatggtgagtctag 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 caagaaggcggcagaaagaccagaagttcaaagtcattattggcttcatggtgagtctag 751
Query: 315 gccagcctaggctacatgagtcaatccagttagctctaaggactctatgaaactcctgtc 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gccagcctaggctacatgagtcaatccagttagctctaaggactctatgaaactcctgtc 691
Query: 375 tatccagagctgaacaatgactgagaattgcaccaacccacttaagatttatatttgttg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tatccagagctgaacaatgactgagaattgcaccaacccacttaagatttatatttgttg 631
Query: 435 gaaagctatgtttgagctagccaagcaagattgagttcacatcatgaactcaatggtaag 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaaagctatgtttgagctagccaagcaagattgagttcacatcatgaactcaatggtaag 571
Query: 495 catttatgtgcaggagaaaggaaaagaaatactatt 530
||||||||||||||||||||||||||||||||||||
Sbjct: 570 catttatgtgcaggagaaaggaaaagaaatactatt 535
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
