BAC Information

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BAC

Clone NameMSMg01-132G21
Chromosome8 (Build37)
Map Location 120,168,419 - 120,318,822
singlet/doubletdoublet
Overlap gene4632417N05Rik, Hsd17b2, Mphosph6
Upstream geneCdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132G21.T7 (MSMg01no132_g21.b1)MSMg01-132G21.TJ (MSMg01no132_g21.g1)
ACCAG339676AG339677
length732722
length of high quality
(start - end)		435 (73 - 507)649 (74 - 722)
definitionCHROMAT_FILE: MSMg01no132_g21.b1 PHD_FILE: MSMg01no132_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:56 2005CHROMAT_FILE: MSMg01no132_g21.g1 PHD_FILE: MSMg01no132_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,168,419 - 120,168,853)(120,318,174 - 120,318,822)
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAATCGGCGGA
ATTCAAATCAAAATCTCTTGTAGTTGAGTAGTTGTGCTCACAACTGACAG
AGCAGACTTTCAGACAGACAGTGAGACAGGAAAAGATGGTCACTGAGTTG
TGGTCAAGAGAGCAAACCAACAGGATAGCATTACAAGACTATGGATAACT
CAATGTTAAAATGATTTGATTTTAAAGTGTGTGTGTGTGTCTGTCTGTCT
GTCGGTCTCTGTGTCTCTGTATGAGTGTGTCTGTATGTGTGTATGTGTGT
GCAGTGTCCCCAGAGGCCAGAAGAGGGCGTTGGGTCCCCTAAGCTGGAGT
TACAGGTGCTTGTGAGTGGCCCAATGTGGATGCTGTACACTGAATTTCAG
TCCTCTGCAAGAAGGATAATGTGTTCTCAATGGCTGAGCCAACACTCCAG
CCTAAGATCTAAGATTATATGTATGTAGTATGTATGTATGTATGTATGTA
TGTATGTATGCATGNCCCCTCTCTCCTCCCTCTTATCCTCTTTCCTTCCT
TCTCCTCTCTTCTTCCCCCTCTCCCCCTCCTTCTTTTCTTCCTCCTTCCA
TTCCCCCCTCTTTTCCTTTCTTCTTTCCCCTCCTCCTTTCTTCCTCCCTA
CTCTCCTTTCCCCATCTCATTTCTCTTTTACTCTCTCTCCCCCCTTTTTC
CTATCCCCCTTTCCCTCTCTTTCTTCCTCCCA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGGGGTCTTTGTGTGATGTAATTATT
TAGAGGTGGGAGGAAGCCATGCCCAAGGCCGTGGTGGCTCTGTCTCCCGG
TGCCGTTGGCCAGATGGATCAGCTTTTACTGCTAACCCTGGGTAGAGATC
TCACTGCGCTCTGGCTCGCTCCTCCGGAGAGCCAGCAGATGGATTTCCAC
CCAGCCCTGACCTCCGCCTCTGCACTTGGTTGTGAGCAGGTGCACTGCTA
ACACGGGTTTCTTCTCCTCCTCAGGAGCTTCATCGTAGAGGAGCAGAGCT
TCTCCCTGTGTGAAGATCTTCTCTACGGAAGGATGTCATTCAGGGGGTTT
AATCCTGAGGTTGAGGTATTAAATATAATTGCTTCAAATTTGAAAAAAAA
TTTTTCCAATTGAATTTTTCCTGCCAATAATTGAGCTTCAGTCTCTCCCC
ACCAGGTACCATTTCTCCTCATTATATAAAAAATAACAAGTCTTGAAATA
TTGCCATAGCTATTTAAAGAAATTGCAGCGTGGCAGTCTGGTTTTATGGA
AGAATTGAGTGGGTAATTTAATATAGCGCGGTGTGCAGTCCCTGACGCAG
CCACTGTTAGTTTCAACTGGGTCTTTTGCAGGAATGTCAAGACTATTCAT
GCGATGCTATTATGAGAAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_g21.b1 MSMg01no132_g21.b1 CHROMAT_FILE:
MSMg01no132_g21.b1 PHD_FILE: MSMg01no132_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:56 2005
         (435 letters)



>mm_chr8_120168219_120169053
          Length = 835

 Score =  841 bits (435), Expect = 0.0
 Identities = 435/435 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgagtagttgtgctcacaactgacagagcagactttcagacagacagtgagacaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgagtagttgtgctcacaactgacagagcagactttcagacagacagtgagacaggaa 260

                                                                       
Query: 61  aagatggtcactgagttgtggtcaagagagcaaaccaacaggatagcattacaagactat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatggtcactgagttgtggtcaagagagcaaaccaacaggatagcattacaagactat 320

                                                                       
Query: 121 ggataactcaatgttaaaatgatttgattttaaagtgtgtgtgtgtgtctgtctgtctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggataactcaatgttaaaatgatttgattttaaagtgtgtgtgtgtgtctgtctgtctgt 380

                                                                       
Query: 181 cggtctctgtgtctctgtatgagtgtgtctgtatgtgtgtatgtgtgtgcagtgtcccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggtctctgtgtctctgtatgagtgtgtctgtatgtgtgtatgtgtgtgcagtgtcccca 440

                                                                       
Query: 241 gaggccagaagagggcgttgggtcccctaagctggagttacaggtgcttgtgagtggccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggccagaagagggcgttgggtcccctaagctggagttacaggtgcttgtgagtggccc 500

                                                                       
Query: 301 aatgtggatgctgtacactgaatttcagtcctctgcaagaaggataatgtgttctcaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgtggatgctgtacactgaatttcagtcctctgcaagaaggataatgtgttctcaatg 560

                                                                       
Query: 361 gctgagccaacactccagcctaagatctaagattatatgtatgtagtatgtatgtatgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgagccaacactccagcctaagatctaagattatatgtatgtagtatgtatgtatgta 620

                          
Query: 421 tgtatgtatgtatgt 435
           |||||||||||||||
Sbjct: 621 tgtatgtatgtatgt 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_g21.g1 MSMg01no132_g21.g1 CHROMAT_FILE:
MSMg01no132_g21.g1 PHD_FILE: MSMg01no132_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:57 2005
         (649 letters)



>mm_chr8_120317974_120319022
          Length = 1049

 Score = 1255 bits (649), Expect = 0.0
 Identities = 649/649 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggggtctttgtgtgatgtaattatttagaggtgggaggaagccatgcccaaggccgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ctggggtctttgtgtgatgtaattatttagaggtgggaggaagccatgcccaaggccgtg 790

                                                                       
Query: 61  gtggctctgtctcccggtgccgttggccagatggatcagcttttactgctaaccctgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gtggctctgtctcccggtgccgttggccagatggatcagcttttactgctaaccctgggt 730

                                                                       
Query: 121 agagatctcactgcgctctggctcgctcctccggagagccagcagatggatttccaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 agagatctcactgcgctctggctcgctcctccggagagccagcagatggatttccaccca 670

                                                                       
Query: 181 gccctgacctccgcctctgcacttggttgtgagcaggtgcactgctaacacgggtttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gccctgacctccgcctctgcacttggttgtgagcaggtgcactgctaacacgggtttctt 610

                                                                       
Query: 241 ctcctcctcaggagcttcatcgtagaggagcagagcttctccctgtgtgaagatcttctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctcctcctcaggagcttcatcgtagaggagcagagcttctccctgtgtgaagatcttctc 550

                                                                       
Query: 301 tacggaaggatgtcattcagggggtttaatcctgaggttgaggtattaaatataattgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tacggaaggatgtcattcagggggtttaatcctgaggttgaggtattaaatataattgct 490

                                                                       
Query: 361 tcaaatttgaaaaaaaatttttccaattgaatttttcctgccaataattgagcttcagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcaaatttgaaaaaaaatttttccaattgaatttttcctgccaataattgagcttcagtc 430

                                                                       
Query: 421 tctccccaccaggtaccatttctcctcattatataaaaaataacaagtcttgaaatattg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tctccccaccaggtaccatttctcctcattatataaaaaataacaagtcttgaaatattg 370

                                                                       
Query: 481 ccatagctatttaaagaaattgcagcgtggcagtctggttttatggaagaattgagtggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ccatagctatttaaagaaattgcagcgtggcagtctggttttatggaagaattgagtggg 310

                                                                       
Query: 541 taatttaatatagcgcggtgtgcagtccctgacgcagccactgttagtttcaactgggtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taatttaatatagcgcggtgtgcagtccctgacgcagccactgttagtttcaactgggtc 250

                                                            
Query: 601 ttttgcaggaatgtcaagactattcatgcgatgctattatgagaagtta 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttttgcaggaatgtcaagactattcatgcgatgctattatgagaagtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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