BAC Information

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BAC

Clone NameMSMg01-133J21
Chromosome8 (Build37)
Map Location 69,790,871 - 69,791,104
singlet/doubletsinglet
Overlap genenone
Upstream geneMarch1, 1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440, LOC665453
Downstream geneNat1, Nat2, LOC100041265, Nat3, Psd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133J21.T7 (MSMg01no133_j21.b1)MSMg01-133J21.TJ (MSMg01no133_j21.g1)
ACCAG340547AG340548
length717717
length of high quality
(start - end)
653 (65 - 717)234 (122 - 355)
definitionCHROMAT_FILE: MSMg01no133_j21.b1 PHD_FILE: MSMg01no133_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:28 2005CHROMAT_FILE: MSMg01no133_j21.g1 PHD_FILE: MSMg01no133_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCGCTAAACGACTCCTAATGCGAGAAGAGGGCGGAATTCAACA
GGGATGCCACTGAAGGCAGGAGCTGATACAGAGGTCATGAAAGGGTGAGG
CTTACTGGTTTGCTTTTCTGGTTTGTCCAGTCTGGTTTCTTTTAGAACCC
AGGACCATCAGCCTAGGGATGACAGCCTAGGGCTGGGATTTACCCTACTG
ATCACTAATTGAGAAAATGCCTTTCATCTGAATCTCATGGAAGCATATGT
CAACTGAGGCTCCTTCCTCTCTAATGAGTCCAGCTTGTGTCAAGTTGAAA
TTAAACCAGCCTATAGATAGGAATTAAAGCTACAAAAATGGACATCCTGT
CAGAAGTAATGTACAAATTCAATACAATCCTCCCCCAAATTCAATGCAAT
TCTTCAGAGAAATAGAAAATATTCTACTTCTATAAATGTAAAAGCACAAA
AGAATCCAGAAAACCAAGCAGCCCACAGCAAAAGAAGTACTTCTGGAGGT
ACCTGATATGCCACAGAGCCACAGTAATGAAAACAGCACAGTGCTGCCAC
AGAAGAGGCACATAGTTAGGGCAATAGAACTGAGGATCACCTAGTTTTTG
ATGAAGATGTCAACAACAATAACAACAAATATATATTAGAGAAAAGACAT
CTTCAGCAAATGGTTCTGAAAAAAAAGTGTCCAAACGTATACACCAAAGA
ATAAAACTAGGTCCTAA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTAGGTTTTTATGTTACATGACCAGTTGTCATGG
TTTTCTTAGTGTTGTGCCGTGGTCATGTTTCTATGACAGGTAGTCTGGCT
GGGAGTTGATTTTAATTCTTACCGTTCTAAATGATGAAATTTACTAGGAT
TTTTGAATTTGGTCTGACCTTATCAGTTATTTTGTCTGGCGTCACGGATC
TACTTCCTCACATATTCCCATTTTTACTAATGTTTTTCTTTTGCCCGTCT
GTAATAGCCAATTTTCCCTCCAGTCCCCAGCAGCTACTGATCTTTTAAGT
AACTCTTTTTTTCTGCCACCCCCCCAATACAAATTAAAGGGGTCTATACA
GTACATTTTTGTTTCTAGCTACATATATTAGCTACTACTCTTTTTTTTTT
AAAGACATGACTTATTTAGTAATTTCATGAGGGAATGAAATGTATTTAGA
TCATAACAGATCATATATCACACTAACACAACTTCTATTTGAATTTGTAT
TTGGCTGACATTGTTATTTTACTTTTATAGCAATCAATTGTTATTACATG
AAGGTGAATAACTTGTAGAAATGCCTTTTCAACTACTTTATTTCAGAAAT
CAAACTGTCTGTTATGTGTTCAGAACTTGCAAATGAGAAACAAAGTGGAC
CCTCAGCTAATAAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_j21.g1 MSMg01no133_j21.g1 CHROMAT_FILE:
MSMg01no133_j21.g1 PHD_FILE: MSMg01no133_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:28 2005
         (234 letters)



>mm_chr8_69790671_69791304
          Length = 634

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcatgtttctatgacaggtagtctggctgggagttgattttaattcttaccgttctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gtcatgtttctatgacaggtagtctggctgggagttgattttaattcttaccgttctaaa 375

                                                                       
Query: 61  tgatgaaatttactaggatttttgaatttggtctgaccttatcagttattttgtctggcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgatgaaatttactaggatttttgaatttggtctgaccttatcagttattttgtctggcg 315

                                                                       
Query: 121 tcacggatctacttcctcacatattcccatttttactaatgtttttcttttgcccgtctg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcacggatccacttcctcacatattcccatttttactaatgtttttcttttgcccgtctg 255

                                                                 
Query: 181 taatagccaattttccctccagtccccagcagctactgatcttttaagtaactc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taatagccaattttccctccagtccccagcagctactgatcttttaagtaactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)