Query= MSMg01no133_o02.b1 MSMg01no133_o02.b1 CHROMAT_FILE:
MSMg01no133_o02.b1 PHD_FILE: MSMg01no133_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:48 2005
(494 letters)
>mm_chr8_111309176_111310069
Length = 894
Score = 785 bits (406), Expect = 0.0
Identities = 418/422 (99%)
Strand = Plus / Minus
Query: 1 aacagatgtgacagcaaagctcttcctcagggtagaaacctaaggaatccatgcatatac 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 422 aacagatgtgacagcaaagctcttcctcagggtagaaacctaaggaattaatgcatatac 363
Query: 61 caaaaccaaaactgaacaaaacgagactgtccagtccagaaatcacccatccttctgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caaaaccaaaactgaacaaaacgagactgtccagtccagaaatcacccatccttctgtga 303
Query: 121 ccatcgccctaataataatccattcaggggataaacagtggacactcacactaaaggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ccatcgccctaataataatccattcaggggataaacagtggacactcacactaaaggaag 243
Query: 181 ggcatttttaaaatctgagtttccctcaccacctcttactgcagaagaaaactgtaacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggcatttttaaaatctgagtttccctcaccacctcttactgcagaagaaaactgtaacct 183
Query: 241 tagggcagagagaggccaggcagataccagcttaatcaagtgaccagcagtgggacagac 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 182 tagggcagagagaggccaggcagataccagcttaatcaagtgaccggcagtgggacagac 123
Query: 301 agacatcgtgcaattcctggtgggatcctctgagaggaacactacagcgattccctgtcc 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 122 agacatcgtgcaattcctggtgggatcctctgagaggaacactacagcgactccctgtcc 63
Query: 361 aaagcatcacatctgaatctactcaacaaggaacatcagatgaacccagatcgagggagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aaagcatcacatctgaatctactcaacaaggaacatcagatgaacccagatcgagggagg 3
Query: 421 tc 422
||
Sbjct: 2 tc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_o02.g1 MSMg01no133_o02.g1 CHROMAT_FILE:
MSMg01no133_o02.g1 PHD_FILE: MSMg01no133_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:48 2005
(635 letters)
>mm_chr8_111162983_111164017
Length = 1035
Score = 1091 bits (564), Expect = 0.0
Identities = 620/644 (96%), Gaps = 10/644 (1%)
Strand = Plus / Plus
Query: 1 tctaaccacctcttacttgatgaggaattccctcatttgatgacagatggacag--ataa 58
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 191 tctaaccacctcttacttgatgaggaagtccctcatttgatgacagatggacagatataa 250
Query: 59 atgctctgggacttgaggaccaaatgcagaggaacgtttcaagcaggctcgctcccagga 118
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 251 atgctctgggacttgaggaccaagtgcagaggaacgtttcaagcaggttcgctcccagga 310
Query: 119 gaaggttataaagcaagaaaacttgaaatggtaacagtgcaacacaaatcctagccatgt 178
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gagggttataaagcaagaaaacttgaaatggtaacagtgcaacacaaatcctagccatgt 370
Query: 179 tttcccgttctccccgcggagagtgtgtggatgtgattcaggcagagaatttgtcctcaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tttcccgttctccccgcggagagtgtgtggatgtgattcaggcagagaatttgtcctcaa 430
Query: 239 gtctggacttagatgtcttgttgtttgtgaaggatttaagctaaaagccagtgcaacaaa 298
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 431 gtctggacttagatgtcttgttgtttgtgaaggatctaagctaaaagccagtgcaacaaa 490
Query: 299 aacaggtcaagaaaatgtactctggacctggtctacctgagcttgaacact--------c 350
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 491 aacaggtcaagaaaatgtactctggacctggtctacctgagcttgaacacttgaacaccc 550
Query: 351 gtgtgtccttttcaagctctgtgactatgggaaatctttcaacctctctgagggtcacag 410
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 551 gtgtgtccttttcaagctctgtgactgtgggaaatctttcaacctctctgagggtcacag 610
Query: 411 actccattgataaaatggcaatagattcttcaccaaaacacttaaggaattacacagtta 470
||||||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 611 actccattgataaaatgacaatagtttcttcaccaagacacttaaggagttacacagtta 670
Query: 471 atatgggcagagattttgccttgcccccaattcaaaagcattccacacacggtcacttat 530
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atatgggcagagattctgccttgcccccaattcaaaagcattccacacacggtcacttat 730
Query: 531 attgctattgctgcttttatgtgcgttatttaaattatccatgatctgggctaggcttaa 590
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 731 attgctattgctgcttttatgtgtgttatataaattatccatgatctgggctaggcttaa 790
Query: 591 gcaatgggccaaaagacaaactacaagcacctagtagatttgaa 634
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 791 gcaatggaccaaaagacaaactacaagcacctagtagatttgaa 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
