Query= MSMg01no134_c01.b1 MSMg01no134_c01.b1 CHROMAT_FILE:
MSMg01no134_c01.b1 PHD_FILE: MSMg01no134_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:13 2005
(684 letters)
>mm_chr8_92789691_92790775
Length = 1085
Score = 1301 bits (673), Expect = 0.0
Identities = 682/685 (99%), Gaps = 1/685 (0%)
Strand = Plus / Plus
Query: 1 atagaacgttccacacattaaacacattaatgacccatgaaataactgttttatctgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagaacgttccacacattaaacacattaatgacccatgaaataactgttttatctgtaa 260
Query: 61 cacattaagcgacattactaaaaacaatgtattaattggtagtgggctatttctttgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacattaagcgacattactaaaaacaatgtattaattggtagtgggctatttctttgaat 320
Query: 121 gtaaggttttggttttttttttttaagatagcgagaaaatcatttcataacttaatcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaggttttggttttttttttttaagatagcgagaaaatcatttcataacttaatcaaa 380
Query: 181 attagaaattagaaccatggcaattgtgtgaaaaagaaacgtgtaaaatacacttggtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagaaattagaaccatggcaattgtgtgaaaaagaaacgtgtaaaatacacttggtaa 440
Query: 241 ttttagacatgtcattttgataaactctcacttttctgatcacttatgatatctaccagc 300
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ttttagacatgtcattttgataaactctcacttttctgatcacaaatgatatctaccagc 500
Query: 301 attgcatgctaagcatgttattagcatgtaaaagactcctactctgccgcccgattccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgcatgctaagcatgttattagcatgtaaaagactcctactctgccgcccgattccct 560
Query: 361 ccacagcctttgctctctcacctgagcagatcccaacacttcacactcaaatgggctccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacagcctttgctctctcacctgagcagatcccaacacttcacactcaaatgggctccc 620
Query: 421 gccacctcctcccttttcaattttcaaccactccctttgatgtgctacaagcatccaccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccacctcctcccttttcaattttcaaccactccctttgatgtgctacaagcatccaccc 680
Query: 481 gacattttctacacacacaagttatcacaattaaatccaatgcaacatcaaacagagcac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacattttctacacacacaagttatcacaattaaatccaatgcaacatcaaacagagcac 740
Query: 541 ggaggccctctacacgggaacataatgtcggcagaaaacgtgtgtgaattatcagtgtgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaggccctctacacgggaacataatgtcggcagaaaacgtgtgtgaattatcagtgtgt 800
Query: 601 tttataaattctctttggggggggg-agcatacaaaatatcaaactagagacaattattt 659
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 801 tttataaattctctttggggggggggagcatacaaaatatcaaactagagacaattattt 860
Query: 660 cactgtctgtttctttgatatcaaa 684
|||||||||||||||||||||||||
Sbjct: 861 cactgtctgtttctttgatatcaaa 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1085
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1075
Effective search space: 724550
Effective search space used: 724550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_c01.g1 MSMg01no134_c01.g1 CHROMAT_FILE:
MSMg01no134_c01.g1 PHD_FILE: MSMg01no134_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:14 2005
(406 letters)
>mm_chr8_92972191_92972997
Length = 807
Score = 704 bits (364), Expect = 0.0
Identities = 382/390 (97%), Gaps = 7/390 (1%)
Strand = Plus / Minus
Query: 1 taagagacacatctctgctttctatcttattt--cttaaa-tcaagcttcaaagtatcta 57
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 514 taagagacacatctctgctttctatcttatttacc--aaactcaagcttcaaagtatcta 457
Query: 58 tggaacatggactctattttatttctggtttgttctttcaagaggcacctattaggattt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tggaacatggactctattttatttctggtttgttctttcaagaggcacctattaggattt 397
Query: 118 tctggtcacaggcaagaaagcctaactctaccaaatgaaggatctcagaaaacaacagaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tctggtcacaggcaagaaagcctaactctaccaaatgaaggatctcagaaaacaacagaa 337
Query: 178 ttgaggaatgctttgaattttgccagggacaggcaggaaccaggaaggttgtgggagcta 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttgaggaatgctttgaattttgccagggacaggcaggaaccaggaaggttgtgggagcta 277
Query: 238 caaaataggagtgtactaagtgtcctatagcagggcagtgaataggatgctgatgtcacc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 caaaataggagtgtactaagtgtcctatagcagggcagtgaataggatgctgatgtcacc 217
Query: 298 atcatggtcctgatgttgtgtgtgtgcgcgtgc--gtgtgtgtgtgtgtgtgtgtgtaat 355
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 216 atcatggtcctgatgttgtgtgtgcgcgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtaat 157
Query: 356 atatatatatatatatatatatatatatat 385
||||||||||||||||||||||||||||||
Sbjct: 156 atatatatatatatatatatatatatatat 127
Score = 62.6 bits (32), Expect = 5e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 354 atatatatatatatatatatatatatatatat 385
||||||||||||||||||||||||||||||||
Sbjct: 127 atatatatatatatatatatatatatatatat 158
Score = 62.6 bits (32), Expect = 5e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 356 atatatatatatatatatatatatatatatat 387
||||||||||||||||||||||||||||||||
Sbjct: 127 atatatatatatatatatatatatatatatat 158
Score = 62.6 bits (32), Expect = 5e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 358 atatatatatatatatatatatatatatatat 389
||||||||||||||||||||||||||||||||
Sbjct: 127 atatatatatatatatatatatatatatatat 158
Score = 62.6 bits (32), Expect = 5e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 360 atatatatatatatatatatatatatatatat 391
||||||||||||||||||||||||||||||||
Sbjct: 127 atatatatatatatatatatatatatatatat 158
Score = 62.6 bits (32), Expect = 5e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 362 atatatatatatatatatatatatatatatat 393
||||||||||||||||||||||||||||||||
Sbjct: 127 atatatatatatatatatatatatatatatat 158
Score = 62.6 bits (32), Expect = 5e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 364 atatatatatatatatatatatatatatatat 395
||||||||||||||||||||||||||||||||
Sbjct: 127 atatatatatatatatatatatatatatatat 158
Score = 62.6 bits (32), Expect = 5e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 366 atatatatatatatatatatatatatatatat 397
||||||||||||||||||||||||||||||||
Sbjct: 127 atatatatatatatatatatatatatatatat 158
Score = 62.6 bits (32), Expect = 5e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 368 atatatatatatatatatatatatatatatat 399
||||||||||||||||||||||||||||||||
Sbjct: 127 atatatatatatatatatatatatatatatat 158
Score = 62.6 bits (32), Expect = 5e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 370 atatatatatatatatatatatatatatatat 401
||||||||||||||||||||||||||||||||
Sbjct: 127 atatatatatatatatatatatatatatatat 158
Score = 62.6 bits (32), Expect = 5e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 372 atatatatatatatatatatatatatatatat 403
||||||||||||||||||||||||||||||||
Sbjct: 127 atatatatatatatatatatatatatatatat 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 174
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 11
Length of query: 406
Length of database: 807
Length adjustment: 9
Effective length of query: 397
Effective length of database: 798
Effective search space: 316806
Effective search space used: 316806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
