Query= MSMg01no134_c21.b1 MSMg01no134_c21.b1 CHROMAT_FILE:
MSMg01no134_c21.b1 PHD_FILE: MSMg01no134_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:20 2005
(697 letters)
>mm_chr8_12870149_12871245
Length = 1097
Score = 1222 bits (632), Expect = 0.0
Identities = 685/710 (96%), Gaps = 14/710 (1%)
Strand = Plus / Minus
Query: 1 gagatgcccctgcctaaaggggtgtgggaccccctccaattcactaggcacacctttaag 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1029 gagatgcccctgcctaaaggggtgtgggaccacctccaattcactaggcacacctttaag 970
Query: 61 gtgtgaagccatccttgggctagatccaacacaataggacaggggcctgggaggacacag 120
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 969 gtgtgaagccatccttgggttagatccaacacaataggacaggggcctggaaggacacag 910
Query: 121 ------------gccaggtggggaaaggtaggagatcagaatggcgttcccaagcaagag 168
|||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 909 gccaaggaagatgccaggtgaggaaaggtaggagatcaaaatggcgttcccaagcaagag 850
Query: 169 caggggaggcacaggggctggacactatgaccttagactcctgtcctcctgaactgtgag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 caggggaggcacaggggctggacactatgaccttagactcctgtcctcctgaactgtgag 790
Query: 229 aggagattcttccaaacgtctcacagtttgcagtggctgagcagccctggaacgcagtga 288
||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 789 aggagattcttccaaacatctcacaatttgcagtggctgagcagccctggaatgcagtga 730
Query: 289 acaggcaaatacccggcgtgatatgaccatttctcgcatgcgccctgtgatctcttcctg 348
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 729 acaggcaaatacccggcgtgatatgaccatttcacgcatgcgccctgtgatctcttcctg 670
Query: 349 agggtgttctgtgccacatacagaataagtcagtggtaagaggggaaatagaatactcct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 agggtgttctgtgccacatacagaataagtcagtggtaagaggggaaatagaatactcct 610
Query: 409 cagccaaggtctgtatggaagagaatggataacccaaagtgggtcccagagcttt-acac 467
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 609 cagccaaggtctgtatggaagagaatggataacccaaagtgggtcccagag-tttgacac 551
Query: 468 acaccagggcctccaaaagaacccttatctagactggatcagggctcagagaagcctcac 527
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 550 acaccagggcctccaaaagaacccttatctagattggatcagggctcagagaagcctcac 491
Query: 528 tggacacagaggaaggacacctggccttggtctctaccttggtccattggaattcctatc 587
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 490 tggacacagaggaaggacacctggccttggtctctaccttggtccattggagttcctatc 431
Query: 588 tactaccctccactgtgcatacatttatttatttgtttactactcaactctatgtgagag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tactaccctccactgtgcatacatttatttatttgtttactactcaactctatgtgagag 371
Query: 648 agccagcttgatgtaggatgttctgatatgtggtaaggaagccaaggccc 697
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agccagcttgatgtaggatgttctgatatgtggtaaggaagccaaggccc 321
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_c21.g1 MSMg01no134_c21.g1 CHROMAT_FILE:
MSMg01no134_c21.g1 PHD_FILE: MSMg01no134_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:20 2005
(742 letters)
>mm_chr8_12734935_12736076
Length = 1142
Score = 1282 bits (663), Expect = 0.0
Identities = 730/769 (94%), Gaps = 29/769 (3%)
Strand = Plus / Plus
Query: 3 ttatcacacaaggaagggagcaggggctgttgtttcatgcatgaattcccaatgtcatca 62
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 174 ttatcacacaaggaagggagcaggggctgttgtttcatgcatgaattcccgatgtcatca 233
Query: 63 cagatccccatggccttgtgggtagaagcgtcttatcacacaggggctgttgatgtaaac 122
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 234 cagatccccatggccttgtgggtagaagcgtcttatcacacagaggctgttgatgtaaac 293
Query: 123 ctaggttcctcactgggaaggaagggcctcagagtcctccccggggcctgaaggacctca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ctaggttcctcactgggaaggaagggcctcagagtcctccccggggcctgaaggacctca 353
Query: 183 caacttgtcaacttgtgtccattccactctcttccagggcagagacccaatctacttcct 242
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 354 caacttgtcaacttgtgtccattccactctctcccaggacagagacccaatctacttcct 413
Query: 243 accacccagggggcaagtagtgccgaggggcagagagaattctcgctacccagat----g 298
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 414 accacccagggggcaagtagtgccgaggggcagagagaagcctcgctacccagatagatg 473
Query: 299 tctgtctgcccaggactgagaggcc---------------tcatttgcttcaaccatcca 343
||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 474 tctgtctgcccaggactgagaggccctttacacataggcctcatttgcttcaaccatcca 533
Query: 344 tggtggtgagattccacagtgctaaaacaagtgtccctgtctcaccacaggggctgctag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tggtggtgagattccacagtgctaaaacaagtgtccctgtctcaccacaggggctgctag 593
Query: 404 atgctggtcccttcttcccacattgtaactgacagctttaggtcacaccgattcccacca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 atgctggtcccttcttcccacattgtaactgacagctttaggtcacaccgattcccacca 653
Query: 464 ttggcttacatgggttagacttcaggcactgctgtcatctgaggt-atttttagccgagg 522
||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct: 654 ttggcttacatgggttagacttcaggcactgctgtcatctgctgtcatttttagctgagg 713
Query: 523 ttgcttcttggaacatgtgttagtgggcaggacccacatggcacaca---------ctct 573
||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 714 ttgcttcttggaacatgtgttagtgggcaggacccacatggcacacatggcacacactct 773
Query: 574 gctctggccttgctggtactggagagacaagaacacctagctctgagtgtggcttactct 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gctctggccttgctggtactggagagacaagaacacctagctctgagtgtggcttactct 833
Query: 634 cacatgtttaatagtctacagtaccagcgagcagcgtaaggccgtacatttgcaaacgct 693
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 834 cacatgtttaatagtctacagtaccagcgagcagtgtaaggccgtacatttgcaaacgct 893
Query: 694 gtgggtttagttctgttttcagacttggaagttttaaaacccagccttc 742
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 gtgggtttagttctgttttcagacttggaagttttaaaacccagccttc 942
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1142
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1132
Effective search space: 828624
Effective search space used: 828624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
