BAC Information

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BAC

Clone NameMSMg01-134D08
Chromosome8 (Build37)
Map Location 42,340,346 - 42,501,830
singlet/doubletdoublet
Overlap genePcm1, Asah1, Frg1
Upstream geneFgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1
Downstream geneLOC100039376, Gm1815, LOC671994, Zfp353, EG620772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134D08.T7 (MSMg01no134_d08.b1)MSMg01-134D08.TJ (MSMg01no134_d08.g1)
ACCAG340979AG340980
length1,1791,170
length of high quality
(start - end)
294 (496 - 789)706 (132 - 837)
definitionCHROMAT_FILE: MSMg01no134_d08.b1 PHD_FILE: MSMg01no134_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:23 2005CHROMAT_FILE: MSMg01no134_d08.g1 PHD_FILE: MSMg01no134_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,340,346 - 42,340,639)(42,501,253 - 42,501,830)
sequence
NNNGGGGACACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGACTGCCAGGGCTATACAGAGAAACCCTGTCTCAGAAAACTCA
AAAAAAGAAAAAAGAAAGAAAAAAAAAAACACCAACGAAAAAAGAAAAAA
AAGATTTTCAAGTTAATATTGTGTTGAATTTTATGTCTCTATTTTTAGAT
AAAATTTTAATATGATTCTAGTAAAATTATCTGCCTGTTAAAGTTTATTT
CTTTTGTTTGTAGTTAGTGACTTTCTGTACTAAAGTTATCCCCATGTTTC
CTCCTTTATCTGCCCTCCTTTCAACATGGTAGGTAATCCATAGTAGAAAT
CCACAATCTTCCTTAAGAGCACTTGGAAACCGTTCTCATGGTCACTCCGT
TTTCTGAGCCTCTGCTTCCGTGTCAGCTTCTATTTCTCCTCTCTGATTCT
TTTTTCCCCCCCCCACCCTTAGTTTTTATATGTATAAGAAAAGCATGGGG
TGTATTGCTAGGGTTGTCCGCACTTCTAATTCTAGTGCTTGGGGCTCTAA
GACAGCCCAACTCAAAGCCAGCCTGGGCTATATAGGAAGCCCAATCTGAG
AAAATAAACAGGGCCTATGGAGAAGGTCATCAGATAGAGACATGCCTGTC
CCAAAACCTGACAACCTAAATTCAATCCCCAAGTTCCACAGCGGAAGTAG
AGAACGGCCTCCTGCAGGTTATCTTTTGGCCTCCATACTTGCATTGTGGA
GTATGGATGGATGGATGGATGAATGAATGAATGTAATTAAATCCTCACAC
CCCACCCTTATCCTAGATTATAAATTTATTTTTGAACTCCAAATATGTTG
TCAGTAGGATTTTATGATTTGGGCATATTTCTTGTTATATTGATATTATT
CTTTGTATTATTAGTAACCTTTCCCTGGAAACGTTTTCTTATGTACTTTC
CTCTTATTTATACTGACACAATTTTATCTTTAAAATTCTTTAATTTTATC
TCATTTCTCTTTTTTATATTCATTCTTATCTTTCATTTTTTTTCTTTTTA
TTTATGCTTTAAATTCTTCTTTTCTCTTCTTCCTCTTATTTTATTTCCTC
TTAATTTTATTTCTTCTTCATCTCTTAATTATCTTCTCTATACCTTCCAT
ATCTTTATATACTTCATCTTCTCCTTACT
CGTGTCTTTTTAAAGGCATGGAGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTTAACCGCTGATGGGTTGATGGTTC
GTTTGCTGATTTCTTAAACGCTGCTTCTCGCCCCTCGAGACTATAAAAAA
GAGTTATGAGAACTGAATGAGACAGCCAACTCATATTATAACAGCCAAGT
GGAGGCATGTGGGTGTGATTTATAGTTAGCCCTATAGAGAAAGATATCTT
GCCCGATCCTATTTCCGTCCTCTTGAAGGATCTAGCCAAAGTTGAACACT
TTATTTCCTGTATCACCGCTGAAGCAGTTTCAACAGGTACTTGTCAGCGA
GCTTCGTGCTGAATGAGCTCGGAGCTTTATCCTGACCGAATCTGAAACTG
TTTAAAATTTAGAATTTGCTTCTGAAGATGTTGTCGATAAAATACAAAGA
AGTTAAGACAGCAGTTATTAAAACCTATGTAGTGCTTTCCATGTTTCCAT
GATTGGTTCTTTGTTTTTTTGAGACAAGGTTTCTCTGTGTAGTCCTGGAA
CTTAACTCTGTAGACTAGGATAGCCATGAACTCAGACACTCACCTGCCTC
ACCTCCCCCACCCCACCAACCCCCAAGTGCTGGGATTAAAGGCTTGGGCT
GCAACCACAGCAAGGCTCAGAATTTGTTGTAAGCACTCTGAATAATCACT
TTTCCCCTAAGATCTCTCCTCGTGTTTCCATTTATGGAGCTGTAATTCAT
AAGCCATAAACTCCTTTTAAAGTGTACAGCTAGTGGGGTTTAGTATATTT
ACGAGTTCACCACTATTTAGTCAGTAAGCATTTTGCCACTCCAAAGGAGA
CTGTTTAACCAAACATTAAATAGTCCCACCCCTTCTGCCCGCCCTTCCAG
CTTCTGTCGAATGCTTTCCAGCTTATAGGATTTACTTGTTATGAATATGT
TAAGGCCTGTGGAATTAAATTGTACCTAGCCTTCTATGGTTGGCCTTCTT
TCCCTTAGGTGGTTGTTGAAAAAGGATTTTCCCCACTATCTTCTCGTTGT
TCCTTGTAAATCTCCGAAATTCCCACCCCGTGCTTTGTCCTCCCTCTTTC
TTTGCCTATCCCCTGCATCCTCCCCGAAAAACCACTCCTCTTTTTGCTAT
CTCTCTTTTCTTTTGTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_d08.b1 MSMg01no134_d08.b1 CHROMAT_FILE:
MSMg01no134_d08.b1 PHD_FILE: MSMg01no134_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:23 2005
         (294 letters)



>mm_chr8_42340146_42340839
          Length = 694

 Score =  569 bits (294), Expect = e-167
 Identities = 294/294 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggtgtattgctagggttgtccgcacttctaattctagtgcttggggctctaagacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggggtgtattgctagggttgtccgcacttctaattctagtgcttggggctctaagacag 260

                                                                       
Query: 61  cccaactcaaagccagcctgggctatataggaagcccaatctgagaaaataaacagggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaactcaaagccagcctgggctatataggaagcccaatctgagaaaataaacagggcc 320

                                                                       
Query: 121 tatggagaaggtcatcagatagagacatgcctgtcccaaaacctgacaacctaaattcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatggagaaggtcatcagatagagacatgcctgtcccaaaacctgacaacctaaattcaa 380

                                                                       
Query: 181 tccccaagttccacagcggaagtagagaacggcctcctgcaggttatcttttggcctcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccccaagttccacagcggaagtagagaacggcctcctgcaggttatcttttggcctcca 440

                                                                 
Query: 241 tacttgcattgtggagtatggatggatggatggatgaatgaatgaatgtaatta 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacttgcattgtggagtatggatggatggatggatgaatgaatgaatgtaatta 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no134_d08.g1 MSMg01no134_d08.g1 CHROMAT_FILE:
MSMg01no134_d08.g1 PHD_FILE: MSMg01no134_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:23 2005
         (706 letters)



>mm_chr8_42501253_42502358
          Length = 1106

 Score = 1102 bits (570), Expect = 0.0
 Identities = 576/578 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   cctcgagactataaaaaagagttatgagaactgaatgagacagccaactcatattataac 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 578 cctcgagactataaaaaagagttatgagaactgaatgagacagccaactcagaatataac 519

                                                                       
Query: 62  agccaagtggaggcatgtgggtgtgatttatagttagccctatagagaaagatatcttgc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agccaagtggaggcatgtgggtgtgatttatagttagccctatagagaaagatatcttgc 459

                                                                       
Query: 122 ccgatcctatttccgtcctcttgaaggatctagccaaagttgaacactttatttcctgta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ccgatcctatttccgtcctcttgaaggatctagccaaagttgaacactttatttcctgta 399

                                                                       
Query: 182 tcaccgctgaagcagtttcaacaggtacttgtcagcgagcttcgtgctgaatgagctcgg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tcaccgctgaagcagtttcaacaggtacttgtcagcgagcttcgtgctgaatgagctcgg 339

                                                                       
Query: 242 agctttatcctgaccgaatctgaaactgtttaaaatttagaatttgcttctgaagatgtt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agctttatcctgaccgaatctgaaactgtttaaaatttagaatttgcttctgaagatgtt 279

                                                                       
Query: 302 gtcgataaaatacaaagaagttaagacagcagttattaaaacctatgtagtgctttccat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gtcgataaaatacaaagaagttaagacagcagttattaaaacctatgtagtgctttccat 219

                                                                       
Query: 362 gtttccatgattggttctttgtttttttgagacaaggtttctctgtgtagtcctggaact 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gtttccatgattggttctttgtttttttgagacaaggtttctctgtgtagtcctggaact 159

                                                                       
Query: 422 taactctgtagactaggatagccatgaactcagacactcacctgcctcacctcccccacc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 taactctgtagactaggatagccatgaactcagacactcacctgcctcacctcccccacc 99

                                                                       
Query: 482 ccaccaacccccaagtgctgggattaaaggcttgggctgcaaccacagcaaggctcagaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  ccaccaacccccaagtgctgggattaaaggcttgggctgcaaccacagcaaggctcagaa 39

                                                 
Query: 542 tttgttgtaagcactctgaataatcacttttcccctaa 579
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  tttgttgtaagcactctgaataatcacttttcccctaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space:   762816
Effective search space used:   762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)