BAC Information

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BAC

Clone NameMSMg01-135A10
Chromosome8 (Build37)
Map Location 74,238,461 - 74,238,792
singlet/doubletsinglet
Overlap geneFcho1
Upstream gene2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289
Downstream geneEG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135A10.T7 (MSMg01no135_a10.b1)MSMg01-135A10.TJ (MSMg01no135_a10.g1)
ACCAG341594AG341595
length740736
length of high quality
(start - end)
236 (45 - 280)332 (84 - 415)
definitionCHROMAT_FILE: MSMg01no135_a10.b1 PHD_FILE: MSMg01no135_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:02 2005CHROMAT_FILE: MSMg01no135_a10.g1 PHD_FILE: MSMg01no135_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAAXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCGAGAATCCGCGGAATT
CAGCATATCTTCCCCTATTGGCTTATTTAAACATTAACAGAAAGATTACA
TGTCAGCAAAAGGGCATCAGGACTTTGTTCCTGTGGGCTGGGGGCTTATC
TTTGTTCACATAGCAACCAGTTGATGTATGACTTTACCCGGCATCAAGGG
GCAGTAGACAGAGGGGAGGTTCCGGCTAGGTGGTGTTGACCCAAACAAGA
TAGCCCTGCTTGTCCTCACACTCTTCTTTAGGTTAAGCTGTTCCCAGCAT
ATGTTTTAACCACGGGGCATACCCAGGTTTGTTTGTTGTTTTTTCTCAGC
CCCTGGCAGCCTCTAGGATCACAAACAACCAGCAATTTCTGAGTACTTTA
TATGACTTACAGGTCTTGAAATTTCATCTTTTTTTTATTAACAGATATGT
ATAGAACATTTTCTCCTAAATTAAAAGATAATATCTTTCTTCTCAGTACC
TCCTGTGAACTTCTTCAAAACTGACCACATAATTGATTACTAAAAAGGGC
CTTCAACTAACTTATCAAGAATGTAATAATCTCATTACCCCCTAATCAAA
CACCCCGGTACTAAGTGCTTGTACTTAAATCAACATCAACATATAGATAC
TAAAAATATCAAACTTCATAGCACTCTATCCTTTTAGGCAATCCTTAATT
ACCCTTTCGTCCCCATCCGATAACTTTGGTCCACGCCAAN
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCTGAAGAATGGCATT
ATTGGGCTAGCCTGGGACAGGTTTTTCTGGAGTAACCCAGGCAGAGATGA
TACTGGGTCAGAGTCATATAGGGGACTTCCATTTTTGGGGTAGCCTGGGC
AAGAGTGGAGCACTTCCTCACACAGATGCACGTGGCTCCCGACGGCTCAA
TCCTGGAAGGCGGAAAGCCTTGGCTCCACGGAGACGTTTCATTGCTATTG
ACAGAAGGGGGTAGCTGAACTCTGGATGGTTCTTTCCCTCTCTATTCAGT
TCCCCCTCCCACACCCTGGGTCTAGCCTGTGCATCCAGGCCCAGACGTAC
TTGCCTTCCTGCAGGGCAGCTGAGCTGTATGCATCGAAGTCCAGAGGCCC
TGGGGTAAGGGGAAGATGGAGATGCCCTGAGGGTAAAAATCCGGTCTGTT
TAGGACGGGTGTGTCCCAGACTCCCCCATGTGAAGCCTTGGGCGGGGCGT
AAAAGGGTTCCTAAGCCTTGTTAAACCTCGGGTGTCGACATGTTAATAAA
CCTTATGGTGCCCCTTTGGGTTTTTTTTGGTCCCCTTTTTATCTTGTTAA
TTACTTTGTTTTACCTTTTCTTATGGGTTGTTCTTTTTCTTCTCTCCCCC
TTTACCAACATTTGTGGCTTTTATTTATCTTCACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_a10.g1 MSMg01no135_a10.g1 CHROMAT_FILE:
MSMg01no135_a10.g1 PHD_FILE: MSMg01no135_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:02 2005
         (332 letters)



>mm_chr8_74238261_74238992
          Length = 732

 Score =  634 bits (328), Expect = 0.0
 Identities = 331/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctgaagaatggcattattgggctagcctgggacaggtttttctggagtaacccaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctgaagaatggcattattgggctagcctgggacaggtttttctggagtaacccaggca 260

                                                                       
Query: 61  gagatgatactgggtcagagtcatataggggacttccatttttggggtagcctgggcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagatgatactgggtcagagtcatataggggacttccatttttggggtagcctgggcaag 320

                                                                       
Query: 121 agtggagcacttcctcacacagatgcacgtggctcccgacggctcaatcctggaaggcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtggagcacttcctcacacagatgcacgtggctcccgacggctcaatcctggaaggcgg 380

                                                                       
Query: 181 aaagccttggctccacggagacgtttcattgctattgacagaagggggtagctgaactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagccttggctccacggagacgtttcattgctattgacagaagggggtagctgaactct 440

                                                                       
Query: 241 ggatggttctttccctctctattcagttccccctcccacaccctgggtctagcctgtgca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ggatggttctttccctctctattcagttccccctcccacaccctgggtctagcctgggca 500

                                           
Query: 301 tccaggcccagacgtacttgccttcctgcagg 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 tccaggcccagacgtacttgccttcctgcagg 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)