NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCGACTAAG
GNGGNATTCCAATGACCTTTTCAAAACAATGAGTTTATGAAAGTCTTAGG
AAAATGGATAGTACCAGAAAATACTACCCTGAGTGAAGTAACACAGTCAC
AAAGAATACACATGGTGCACACTCACTGGTAAATTAATATTATCCCAAAA
GCTTGGAATTTCCAAGATACAATTTACAGACCATATAAAGATCATGAAGA
AGGAATACAGAAACGTTGATTCTTCAGTCCTTCCTAGAACAGGGAACAAA
ATACTCAGAGGAGGTAGATGGTGGGATTTTCTTGGCAGAATGAGAAGAGG
GCAAGGGGAAAAATGTGTGTGGGGATCAGGATTAGGTATGAGAGGACATA
AACATGATATACAGAGGGTTAGGAATTTGAACAGATGTGTGTAGCAATGG
GGGATGTGAAACTGGTGGTAGCCACAAGCATGTCGCAGAACACAGAAAAG
CAAGAGACACCCAGGATCCAACAGGGATGATAGTAGCTGAAATGCACAAC
AAAGTGGAGGGAGAACCTGTAGAAACTATATTCAGAGGCTAGGCAAAGTC
CCTTTTCATGAGATGGAACCACCCACTCATCTCCAAATTCTTAACCTAGA
AGGGCTCTTATCTAAAGGAAATATGAGGACAAAGTGTGGAGCAGAGACTG
AAAGAAA

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAATTTATTTCTTTGGAAACAGAAAA
AATAACTGTGTGGAATGTATTTTTGAGATTTATATTTAGCAAGAATTATA
AACCTATGCAAAACTTATATTGTTTTGGGATTTTTTCTTAAGATTTCTGG
TATAATTAAGATTCTTAGTATTGTTATTTAATTAGTTGTGAAGCAGGATA
TTGAATATCTAATAATATGTAACATTTCATTACTATAAAATAATACCAGC
ACATATTACTAATGCAATCCAATATAATTTACCTTGTTTATAGAAAGATG
CTTGTTTGTACATCAAAAATGAATAGAATCATAGTAATTTCTACTATTTT
CTATATTTATTGTATTTAGAATCTATCTTAAGTATTGACCTTTTGATATG
AAGAAACAGCATTCCCAAGGTATCCATGGAAATAAAATATTAAATTGGGT
TCTTGTTTATAGTTTAAAATTTGTCCATGACTATTGAGGGAACATGACAT
CAAGCAAGCAGGCATGATTTTGCAGCAGAATCTGACAGCTTTCATAATAT
CAATAAGTACATGGAAGAGAGAGAAAAATACTAGACCTGGCTTGGATTTT
TGAAACATTAAATCCCACATCCAGTGACTTAGTTCATCCAAGGCTATTAC
TTCT

Query= MSMg01no135_k24.g1 MSMg01no135_k24.g1 CHROMAT_FILE:
MSMg01no135_k24.g1 PHD_FILE: MSMg01no135_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:52 2005
         (513 letters)



>mm_chr8_53879722_53880637
          Length = 916

 Score =  754 bits (390), Expect = 0.0
 Identities = 484/516 (93%), Gaps = 3/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatttatttctttggaaacagaaaaaataactgtgtggaatgtatttttgagatttata 60
           ||||||| ||||||||||||||||||||||| | |||| ||| |||||||||||||||||
Sbjct: 201 taatttacttctttggaaacagaaaaaataattatgtgcaatatatttttgagatttata 260

                                                                       
Query: 61  tttagcaagaattataaacctatgcaa--aacttatattgttttggg-attttttcttaa 117
           |||||||||||||||||||||||||||   |||| |||| ||||||| ||||||||||||
Sbjct: 261 tttagcaagaattataaacctatgcaatctacttctattattttgggaattttttcttaa 320

                                                                       
Query: 118 gatttctggtataattaagattcttagtattgttatttaattagttgtgaagcaggatat 177
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gatttctggtataattaagattcttagtattgtcatttaattagttgtgaagcaggatat 380

                                                                       
Query: 178 tgaatatctaataatatgtaacatttcattactataaaataataccagcacatattacta 237
           ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 381 tgaatatctaataatatataacatttcattactataaaataattccggcacatattacca 440

                                                                       
Query: 238 atgcaatccaatataatttaccttgtttatagaaagatgcttgtttgtacatcaaaaatg 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 atgcaatccaatataatttaccttgtttatagaaagatgcttgtttgtacatcaaagatg 500

                                                                       
Query: 298 aatagaatcatagtaatttctactattttctatatttattgtatttagaatctatcttaa 357
           ||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||| |||
Sbjct: 501 aatagaatcatagaaatttctaatattttttatatttattttatttagaatctatcctaa 560

                                                                       
Query: 358 gtattgaccttttgatatgaagaaacagcattcccaaggtatccatggaaataaaatatt 417
           ||||||||||||||||| ||||||| | |||  |||||||||||||||||| ||||||||
Sbjct: 561 gtattgaccttttgatacgaagaaaaatcataaccaaggtatccatggaaagaaaatatt 620

                                                                       
Query: 418 aaattgggttcttgtttatagtttaaaatttgtccatgactattgagggaacatgacatc 477
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaattgggttcttgttcatagtttaaaatttgtccatgactattgagggaacatgacatc 680

                                               
Query: 478 aagcaagcaggcatgattttgcagcagaatctgaca 513
           |||||||||||||||||| ||| |||||| ||||||
Sbjct: 681 aagcaagcaggcatgattctgctgcagaagctgaca 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 916
Length adjustment: 10
Effective length of query: 503
Effective length of database: 906
Effective search space:   455718
Effective search space used:   455718
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)