Query= MSMg01no136_l04.b1 MSMg01no136_l04.b1 CHROMAT_FILE:
MSMg01no136_l04.b1 PHD_FILE: MSMg01no136_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:10 2005
(639 letters)
>mm_chr8_116474237_116475275
Length = 1039
Score = 1212 bits (627), Expect = 0.0
Identities = 633/635 (99%)
Strand = Plus / Plus
Query: 5 gaattctgtccttgacatcattcctagaccacttgcggagccaccttgcaagaccataaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtccttgagatcattcctagaccacttgcggagccaccttgcaagaccataaa 264
Query: 65 attaaaagattgccccaagttctacagttccttgatatttggccccaaccttcacagctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attaaaagattgccccaagttctacagttccttgatatttggccccaaccttcacagctc 324
Query: 125 cttgtactccagtaaaaagccatccattgtatccatcagaggaagccactccttacaagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgtactccagtaaaaagccatccattgtatccatcagaggaagccactccttacaagg 384
Query: 185 atctggaatcctttcacacacacccctctcaggcccagtctgctctctggagtcacaccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctggaatcctttcacacacacccctctcaggcccagtctgctctctggagtcacaccc 444
Query: 245 cacacatctgctgtctcccaaactgtcagcagtgagctgtttgtgtctcctccctctggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacacatctgctgtctcccaaactgtcagcagtgagctgtttgtgtctcctccctctggg 504
Query: 305 agagctccaggttctccacgccaatgcctttcacactttcacaccgtcggtggcgcatca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agagctccaggttctccacgccaatgcctttcacactttcacaccgtcggtggcgcatca 564
Query: 365 accacatcctaccaaaggaagctcatcccagctgttgtgtacgtatcagactcgttcttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 accacatcctaccaaaggaagctcatcccagctgttgtgtacgtatcagactcgttcttc 624
Query: 425 ctcgtggtccgtggtttagatgctgtggcatctctgagtgacaggaacatgggctttcac 484
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctcgtggtccatggtttagatgctgtggcatctctgagtgacaggaacatgggctttcac 684
Query: 485 gctttccattgcactccagaagcagagtccaacacatcaacagaaatcaatgggcctgca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctttccattgcactccagaagcagagtccaacacatcaacagaaatcaatgggcctgca 744
Query: 545 acgttgccttctcagattcatttctagctctacccagtctttgcaactcttcccaaccct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acgttgccttctcagattcatttctagctctacccagtctttgcaactcttcccaaccct 804
Query: 605 tctctcaaaggccttctcttactaaaatctgggca 639
|||||||||||||||||||||||||||||||||||
Sbjct: 805 tctctcaaaggccttctcttactaaaatctgggca 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_l04.g1 MSMg01no136_l04.g1 CHROMAT_FILE:
MSMg01no136_l04.g1 PHD_FILE: MSMg01no136_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:10 2005
(629 letters)
>mm_chr8_116624486_116625513
Length = 1028
Score = 1089 bits (563), Expect = 0.0
Identities = 605/629 (96%), Gaps = 17/629 (2%)
Strand = Plus / Minus
Query: 1 cagggtgcagttcccagcaccccatgcttggtggctcacaactggctttaactccatctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 cagggtgcagttcccagcaccccatgcttggtggctcacaactggctttaactccatctc 931
Query: 61 caagagatccaatgccctcttttgatttcatgcatgcacatgcgcgtgcacttgcgtgta 120
||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 930 caagagatccaatgctctcttttggtttcatgcatgcatatgcgcgtgcacttgcgtgta 871
Query: 121 tacacatacatacatacacacacacacacacacacacacacacacacagtcacacatatg 180
||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 870 tacacatacat----------------acacacacacacatacacacagtcacacatatg 827
Query: 181 tacacacataaaaacttgttttaaaaaggtagcacaaaggtgcttacaaaagtgataaac 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 826 tacacacataaaaacttgttttaaaaaggtagcacaaaggtatttacaaaagtgataaac 767
Query: 241 actagaatgtattgctgtagaagtgagaagagacactcttttctgtagggcaacaggaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 actagaatgtattgctgtagaagtgagaagagacactcttttctgtagggcaacaggaag 707
Query: 301 cacacaggcaagctcattgcagtaagcttagaaaacggccagggagctaatcctcaggca 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 706 cacacaggcaagctcattgcagtaagcttag-aaacggccagggagctaatcctcaggca 648
Query: 361 cagaaggcacacaggaaggaagattctagaacatatggtggtgtgggatagggaagcagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cagaaggcacacaggaaggaagattctagaacatatggtggtgtgggatagggaagcagc 588
Query: 421 ctgtgtcggagtcagagaggagtccggggccttgatggctcagacaccaagacggtcacc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 587 ctgtgtcggagtcagagaggagtccggggccttgatggctcagacaccaagacgatcacc 528
Query: 481 agtgaggacttgggggcccggtgttaagggatattttgtggtctcccatctccacgtgac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agtgaggacttgggggcccggtgttaagggatattttgtggtctcccatctccacgtgac 468
Query: 541 cacacttgccattggcatttaggcactttcagtaactcatgatggcgccctcttcaggct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cacacttgccattggcatttaggcactttcagtaactcatgatggcgccctcttcaggct 408
Query: 601 tacagaataataacagcatttactttctc 629
|||||||||||||||||||||||||||||
Sbjct: 407 tacagaataataacagcatttactttctc 379
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1028
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1018
Effective search space: 630142
Effective search space used: 630142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
