BAC Information

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BAC

Clone NameMSMg01-140K04
Chromosome8 (Build37)
Map Location 68,089,794 - 68,090,194
singlet/doubletsinglet
Overlap genenone
Upstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967
Downstream geneMarch1, LOC100040986, 1810029B16Rik, Tktl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140K04.T7 (MSMg01no140_k04.b1)MSMg01-140K04.TJ (MSMg01no140_k04.g1)
ACCAG345718AG345719
length713706
length of high quality
(start - end)
405 (46 - 450)270 (74 - 343)
definitionCHROMAT_FILE: MSMg01no140_k04.b1 PHD_FILE: MSMg01no140_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:25 2005CHROMAT_FILE: MSMg01no140_k04.g1 PHD_FILE: MSMg01no140_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCACTCCTCTTGGCTCTTGGGATGCAGTGTTTAGCACTTAAATACAT
TGGAGTACCAGACCAAACCCAAGAAAGGTTACTACTCAAAGTGGACTAGG
CTCTCCTCTATTAATTACTATAAGAAAATGCTCTACAAATGTGTATACAT
CCTGATCTCATGGAGCCATTTTTTCAGCTAAGGTTCCCTCTTCTCAGATG
ACTATAGTTTGTGTCAAATTGACATAAGTCTAGCAGTACAATTTTTGATG
ATAAAAGGGAATGATAAAATATTTGAAATCTGCTCACCTTGAGTTCTGTA
AGTTGTAGTGATGGAAAGAGGGGTCTTAAGGAAAATAAACTACATTTATG
GGCTTTTGGGAGAAAAAGGTTTCACCCATGCAGCCATAGTCCATATCAGA
TTTACAACGTCAACTTTTCCTCTTTCATAGTTTGCCCAAAGACCAACTGA
TGGGTAATGTATATCATGATTTAGCTTCAGCAGATTACACAATGACCAAT
TTGCACGGATTTTACTTAGGTATGAGTTTTGTACCTCTTCCTGCAAGAAA
ATACCTGATTCACTGTAACCTTAGCCTGATTTTTTCTTTCCTTGTTACAT
AAATGTATACCCATTTTTTACCCTATTATCTTATTTCCAATGTTAAAGTA
CCTTTTTCCTCTC
TCGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGTTTGTATCAAGTTGACAAAACACC
AACCAGAATAAGAATCCATTTAAGGTATTCTTCAACTCTGTGTATTCACC
CATCCAAAGACAATGGTTTCCAACAGTATGTGAAATGCATAGTTACTTAA
ACAGCACAATATTTAAACCGGAGTGGTTAGAAGCACTGAGTACTCTTCCA
GAGAACAACCTGGGTTTAATTCCCAGCATCCACATGGCAGTTCAAAACTG
CCTATAACTTCAGTTCCAGAAGATATTTCACCCTTACAACAACATACATA
CAGGAAAGAACTACCTGCATAAAACTAAATACGACACTACAATACACAGA
ATCCTTATTACACATATAATATACAATACAAAAAATGATTTCATATTGAG
TACCTCCCCATATCTATCAAGCTTAACCTAACATATCTCTATCTATAGAA
TTATAAACACCTCATCTTATGTGCGTCTAACATTATACAGCGTGCTCGAT
CGCACACACTTATACGTCTATGACTGGCTCCACCATATCTATTGTCATTC
TATGGTTACACAATCAGCTCCATATCTCATCCGTCTGTCAAGCCTCCCTT
TTTGACATGATCTTCATCATCATACTTGTTCTTGACTTTCCACCCTCTCT
CCCGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_k04.b1 MSMg01no140_k04.b1 CHROMAT_FILE:
MSMg01no140_k04.b1 PHD_FILE: MSMg01no140_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:25 2005
         (405 letters)



>mm_chr8_68089590_68090394
          Length = 805

 Score =  745 bits (385), Expect = 0.0
 Identities = 397/401 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcctcttggctcttgggatgcagtgtttagcacttaaatacattggagtacc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcctcttggatcttgggatgcagtgtttagcacttaaatacattggagtacc 264

                                                                       
Query: 65  agaccaaacccaagaaaggttactactcaaagtggactaggctctcctctattaattact 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaccaaaccaaagaaaggttactactcaaagtggactaggctctcctctattaattact 324

                                                                       
Query: 125 ataagaaaatgctctacaaatgtgtatacatcctgatctcatggagccattttttcagct 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 ataagaaaatgctctacaaatgtgtatacatcctgatctcatggagccattttttcagtt 384

                                                                       
Query: 185 aaggttccctcttctcagatgactatagtttgtgtcaaattgacataagtctagcagtac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggttccctcttctcagatgactatagtttgtgtcaaattgacataagtctagcagtac 444

                                                                       
Query: 245 aatttttgatgataaaagggaatgataaaatatttgaaatctgctcaccttgagttctgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatttttgatgataaaagggaatgataaaatatttgaaatctgctcaccttgagttctgt 504

                                                                       
Query: 305 aagttgtagtgatggaaagaggggtcttaaggaaaataaactacatttatgggcttttgg 364
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 aagttgtagtgatggaaagaggggtcctaaggaaaataaactacatttatgggcttttgg 564

                                                    
Query: 365 gagaaaaaggtttcacccatgcagccatagtccatatcaga 405
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagaaaaaggtttcacccatgcagccatagtccatatcaga 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)