BAC Information

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BAC

Clone NameMSMg01-141B01
Chromosome8 (Build37)
Map Location 44,035,435 - 44,036,119
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141B01.T7 (MSMg01no141_b01.b1)MSMg01-141B01.TJ (MSMg01no141_b01.g1)
ACCAG346037AG346038
length1,2061,182
length of high quality
(start - end)		685 (91 - 775)720 (87 - 806)
definitionCHROMAT_FILE: MSMg01no141_b01.b1 PHD_FILE: MSMg01no141_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:03 2005CHROMAT_FILE: MSMg01no141_b01.g1 PHD_FILE: MSMg01no141_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTTTTTNTNNNTATCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGAATAATCTCATTACCCATTAAATGGGAAACATAAT
ATCTCTTTCATCTCTGCCCACCTAATTACCTTAACTGTGCAGGAATCTGC
CATGTTTATGGTCCTAGCATCATCATTAAGCTAAAAACTGAGCGTTCCAT
TCTACCCTGAAAAATTCCAATTAAACCCACTTGGAGACATGCACTGAGTT
CCAGCACGGATTCTTTCCCATAAAGATCAAGGGTAGCAGAATGTCACATC
AGAGAGAGGCCAGCTGTAAGCTCATTAGCAAGACTGATGATGAACTGCCG
TCCTCCAGTTCTTACCTACCTGAGCATCTCCAGGTGGATGAAAGCTGCAT
CCTGTGACACTCTGTGGGGTATGCAGGAGGTCATCTCTCATTAAAGTAAA
TTCACATTATGCTTCCACACCAGCTGAGCTGAAGAACTGAACTTTGAAGT
GGTACAAGATCTGCAGAAACAGATTAAGGGCATTTAGCAATAACTTAATT
TAGCAATAATCTAAGCAATGGACGGGGACAAATTGGATGTTTGGGGTTCA
AGCAAAAATTGTTAACAGGAATAGATAGTTGCAGAATATTGGTGTCATTT
AAACTCTTTTTTTTTTCTTTCCATGTTTTATTAGGTATTTAGCTCATTTA
CATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCC
CCTACCCGCCCACTCCCCCTTTTTGNCCCTGNCGTTCCCCTGTTCTTGAT
CTTATAAAGTTTGTGTGTCCAATGTGCCTCTCTTTTCCGTGATGGCCGAC
TAGGCCATCTTTTGATACTTATGTAGCTATAGTCAAAAGCTCCCGGTTAA
TGGTTAACTTATAATGTTGATCCCCCTTATAGGTTTGCAAAACCCCTTTA
ACTTCCCTTGGGAACTTTTTTCCATCTCCCCCATTGGGTAAACTCCCGGT
GACCCATCCATTAATCTTAATGGTGGACTTCCCTTTTTCGTGTTTTGCTT
AACCCCCGTCTTTTATTTCCTCAAAAAAAAATTCTCTCTCTGTGGCCCCT
TTTTATATAAAACTCTTCCCTACCGTTTTCACTTGGGGTCTCACTCTTTC
CTTTGTTTTTAAATTATGGCTGTCTATCCCTTCATAAAATATTCTCTATC
CCTCTT

NCCAATTTTTTNNTCATCAAGGAGNCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTATAGAGCAGACTGACCTT
GAACTTCTGGTAATTCTCTTGCCTCTCCTTCCCAAGAGCTGGAATAATAG
ATGTTGTGCCAGGAAGGGTTTGTGAACCCCAAAAGACCACCAAGGAGCTA
TATTAGGGTCTCTTGATTATAAACTTGAGTTAGGACTCATGGCTGACTCA
CGATTAAGCAGCCCCCAACCCTCATGGGAACAAGGTTTTATAGGAAATGG
CAAGCAAGGGGGTGGGTATCCATTCGGGCAAGTATCTTAATTGAATGTTA
ACTGATGGGTGCTCTGAAGCAAGAGCATACACAATCACAAACTAGATCAG
CAACAGACTCATCTTTGATTAACTGTTGCTAGGAAGTAGCTAGGGAGTAA
CTCTGGTCGAGGACAGACCATGGGGTCTTTCCTGGTATTTGTGTGCAGCT
TGGGTTCATCTGTGGGTCAAGTTCTCAGGATTTTTTTTTTCTTTAAGTTG
GAGGCTGGTTCCAAGGTAGAATAACTTTAGCCTCTCAACATATATGTATT
ATATGCCAGCCCTGTTTTAAAATAATTTGGATCACATAGTTTTGCCCACC
AAACTTTAAGCTAGGGTTGTCACTTCAAACTTATATAACAATATTTATGT
GTATATGACTTTTACCATGTGTGCGCGTGTGTATGAGGGTGTCAGCACAT
GTATATGTAGGTACAGATCATAGAATAATCTTCAGTATTATCTTTAGGAA
TACCGCTGACCTCCTTTGAAACAGTTTCTCTGTGCTTGGGGTTCATCAAT
TAGCCTCATCTGGGTAGTCAGTTCAGCACAGGAATCCTCCTGTTCCCATA
TCCCCAGCACTGGAGTTACAGGTACAGCATACCTTGTTCAGCATTTTTGT
GGGAACTCTAAAGGTTGGAGGTAGTTCTTTATGTTTACAAGGAAAGGGGT
TTTTTTAAAGAAACCTTTCCCCCCCGCCCCTGAAAATTGCCCCTGTGTTT
TTTATTCCCCAAATTGGAAGAACATTGTATTTCCTCTCCAAATATATGGG
TTGTTTTTAGGGAAACCTCTCTTTTTTTTTTATTCCCGGCTCCCCGGAAA
TAACTGGGTCCAAATTAACTCCCCCACCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_b01.b1 MSMg01no141_b01.b1 CHROMAT_FILE:
MSMg01no141_b01.b1 PHD_FILE: MSMg01no141_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:03 2005
         (685 letters)



>mm_chr8_44035235_44036319
          Length = 1085

 Score = 1317 bits (681), Expect = 0.0
 Identities = 684/685 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaacataatatctctttcatctctgcccacctaattaccttaactgtgcaggaatctgc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 gaaacataatatctctttcatctctgcccacataattaccttaactgtgcaggaatctgc 260

                                                                       
Query: 61  catgtttatggtcctagcatcatcattaagctaaaaactgagcgttccattctaccctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtttatggtcctagcatcatcattaagctaaaaactgagcgttccattctaccctga 320

                                                                       
Query: 121 aaaattccaattaaacccacttggagacatgcactgagttccagcacggattctttccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaattccaattaaacccacttggagacatgcactgagttccagcacggattctttccca 380

                                                                       
Query: 181 taaagatcaagggtagcagaatgtcacatcagagagaggccagctgtaagctcattagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaagatcaagggtagcagaatgtcacatcagagagaggccagctgtaagctcattagca 440

                                                                       
Query: 241 agactgatgatgaactgccgtcctccagttcttacctacctgagcatctccaggtggatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agactgatgatgaactgccgtcctccagttcttacctacctgagcatctccaggtggatg 500

                                                                       
Query: 301 aaagctgcatcctgtgacactctgtggggtatgcaggaggtcatctctcattaaagtaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagctgcatcctgtgacactctgtggggtatgcaggaggtcatctctcattaaagtaaa 560

                                                                       
Query: 361 ttcacattatgcttccacaccagctgagctgaagaactgaactttgaagtggtacaagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcacattatgcttccacaccagctgagctgaagaactgaactttgaagtggtacaagat 620

                                                                       
Query: 421 ctgcagaaacagattaagggcatttagcaataacttaatttagcaataatctaagcaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcagaaacagattaagggcatttagcaataacttaatttagcaataatctaagcaatg 680

                                                                       
Query: 481 gacggggacaaattggatgtttggggttcaagcaaaaattgttaacaggaatagatagtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacggggacaaattggatgtttggggttcaagcaaaaattgttaacaggaatagatagtt 740

                                                                       
Query: 541 gcagaatattggtgtcatttaaactcttttttttttctttccatgttttattaggtattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcagaatattggtgtcatttaaactcttttttttttctttccatgttttattaggtattt 800

                                                                       
Query: 601 agctcatttacatttccaatgctataccaaaagtcccccatacccacccacccccactcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agctcatttacatttccaatgctataccaaaagtcccccatacccacccacccccactcc 860

                                    
Query: 661 cctacccgcccactccccctttttg 685
           |||||||||||||||||||||||||
Sbjct: 861 cctacccgcccactccccctttttg 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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