BAC Information

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BAC

Clone NameMSMg01-141J03
Chromosome8 (Build37)
Map Location 52,341,510 - 52,342,320
singlet/doubletsinglet
Overlap geneLOC667517
Upstream geneLOC100039954, LOC100039966
Downstream geneLOC623872, LOC100040220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141J03.T7 (MSMg01no141_j03.b1)MSMg01-141J03.TJ (MSMg01no141_j03.g1)
ACCAG346408AG346409
length1,1921,232
length of high quality
(start - end)		679 (90 - 768)794 (79 - 872)
definitionCHROMAT_FILE: MSMg01no141_j03.b1 PHD_FILE: MSMg01no141_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:07 2005CHROMAT_FILE: MSMg01no141_j03.g1 PHD_FILE: MSMg01no141_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGTATTNNNNNNGGCAGTGGNCGCTAAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCCTGATCTTTCCAAACTCTTTTATTAATGGGTGTTGGATT
TTGTCAAATGCTTTTTCCTTATCTAATGAGATGAGGCTTTTGTCTTTGAG
TTTGTTTATACAATGGATTACATTGATGGATTCCATATATTAAACCATCC
CTGCATCCCTGGAATGAAACCTACTTGGTCAGGATTGATGATTGTTTTGA
TGTGTTCTTGGATTCGGTTAGCGAGATTTTTATTGAGTATTTTTGTATCA
GGGAAATTTGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTTTGTGGTTTA
GGTATCAGAGTAATTCTGGCTTCATAGAATGAGTTGGGTAGAGTTCATTC
TGCTTCTATTTTGTGGAATAGTTTGTGCAGAACTGGAATTAGATCTTCTT
TGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTT
TGGTTGGGAGACTATTAATGGCAGCTTCTATTTCCTTAGGGGATATAGGA
CTGTTTAGATCATTAATCTGATCCTGATTTAACTTGGTACCTGGTATATG
TCTTGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAG
CCTTTTGTAGAAGGATCAGATGGTGTTTTGGATTTCTTCAGGATCTGTGG
TTATGTCTCCAGTTTCATTTCTGATTTTGTTAATTAGGATGCTGTCCCTG
TGCTCTCTAGTGAGACTGGCTAAGAGTTTTATCTATCTTGTTGATTTTCT
CAAAGAACCAGCTCCTTGTTTGGTTGATTCTTTGAGTAATTTTTCTTGTG
TCCGCTTGGTTGATTTTGCCCGTGGTTTTGATTAATTCCTGCTGTCTACT
CCTCTGGGGGGAATTTGCTTCCCTTTTTTCCCAAAGTTTTAATGTGCTTT
TCCCCAGCTACTAATGTGGTCTTTTTCTAGTTCTNTTTTTGTTCCCCTTT
TACCTTTTAATTTTCCCCTTATACAGGTTTCTTTTTTTCCCCTATTCTCT
TCTTTTTCCTTGTTCTTTTTTTTCTTTATCTTTCTATTAACTTTTTTTTC
TTTTTTTTTTTTTTCCCCTGTTCTTTCTTCATTTTCTATTATGTCTTTCT
TCCTTTCTTTTATCTATTTACTTCTTCTCTTTCATNTTTCTT

NNCCATTCTTTNNNNATGCATGGAGGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTACACATTTCTTGCTCTGT
TCTGGTTGGGTGGTTTGCTCACTTCAATGCTTTCTAACTCTGCACAGAGA
AAGAAAGGGAAGAAACATTTCTGGATGCAATTAAAGTAGTATCATGCTTT
CTTTGGATATTGAAAAATCTGTTTATTAGATGATTTTTTAACTTTTTTAT
TATTAATTTAACCACCTTAGTTTGAAAATAAGCCTACAAGTCATTTTACT
AACTGGCCTGATCGTAAATTTGTTTCTAATGTTTTTTATGTCCTCAGAAA
GCAGAGATGAATTGAGCTGGCTTAATTGGCTGAAACACCATGGAAATGTA
ATGTAGATGATTTAATCAGACTATGGCCCTAATGGAGTTAAGCACTCTGT
CCACCAGGGAAATGCATGGTCTCTTACTGAGTTTCTAAGTGGCTGCTTAT
TTCTCTATGTAAGGCACTTGCTTTTGTAGTTTGCATGCGACCTTGTCTAG
AGATTTAAAATGCCTTGTACATTTTAAAACACTGGTAGTTTCGGAGTAGC
ACTACAGCTTTTTTTTTTCTTTTAATTAAATTGCATTTTAGCTTTTGTTA
TAGAATGACTGTTGGAACAACGTATTCAATTCTCCTCCTGCTCTGTATAT
ATATATATATATATATGTAAATATATATATACATATATATATATGTAAAT
CTTTATTAGATATTCTTTTAATTTACATTTCAAATGTTATCCCCTTTCCT
GGTTTCTCCTCTGAAAACCCCTATCCTCTTCCCCCTCCCCCTGCTCCCCA
ATCTACCCGCTCCTGCATCCTGGCCCTGNCAGTCCCCTGTACTGGGGCAT
AAAACCTTCACAGGGCCTTTCTTCCTATTGATGACCCACTAGGCCATCCC
CTGTTACATATGCAGCTTAGAGCCATGATTCCCCCCCAGGGGTTTCTTTT
TGGTGGGGGGGTAAGCCCCCCGGAAAATCCGGGGGAAACGGGGAAAATCC
AATTGGTGGGTCCCAATAAAGGGGTGGCAAAACACCCCCGGTTTTTTTTT
TTAAAAAAAAAACCTTACCAAAAAATTTTGAACAAAATCTTTTTTTTCCC
AACCCTTCAAATTTTTTTCTAAAAAACAAGAGCCCCTTTTTTTAAATAAA
ACCACACTTGGTGGCCGCCCCCATATATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_j03.g1 MSMg01no141_j03.g1 CHROMAT_FILE:
MSMg01no141_j03.g1 PHD_FILE: MSMg01no141_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:07 2005
         (794 letters)



>mm_chr8_52341303_52342496
          Length = 1194

 Score = 1433 bits (741), Expect = 0.0
 Identities = 783/811 (96%), Gaps = 24/811 (2%)
 Strand = Plus / Plus

                                                                        
Query: 8    catttcttgctctgttctggttgggtggtttgctcacttcaatgctttctaactctgcac 67
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208  catttcttgctctgttctggttgggtggtttgctcacttcaatgctttctaactctgcac 267

                                                                        
Query: 68   agagaaagaaagggaagaaacatttctggatgcaattaaagtagtatcatgctttctttg 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268  agagaaagaaagggaagaaacatttctggatgcaattaaagtagtatcatgctttctttg 327

                                                                        
Query: 128  gatattgaaaaatctgtttattagatgattttttaacttttttattattaatttaaccac 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328  gatattgaaaaatctgtttattagatgattttttaacttttttattattaatttaaccac 387

                                                                        
Query: 188  cttagtttgaaaataagcctacaagtcattttactaactggcctgatcgtaaatttgttt 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388  cttagtttgaaaataagcctacaagtcattttactaactggcctgatcgtaaatttgttt 447

                                                                        
Query: 248  ctaatgttttttatgtcctcagaaagcagagatgaattgagctggcttaattggctgaaa 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448  ctaatgttttttatgtcctcagaaagcagagatgaattgagctggcttaattggctgaaa 507

                                                                        
Query: 308  caccatggaaatgtaatgtagatgatttaatcagactatggccctaatggagttaagcac 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508  caccatggaaatgtaatgtagatgatttaatcagactatggccctaatggagttaagcac 567

                                                                        
Query: 368  tctgtccaccagggaaatgcatggtctcttactgagtttctaagtggctgcttatttctc 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568  tctgtccaccagggaaatgcatggtctcttactgagtttctaagtggctgcttatttctc 627

                                                                        
Query: 428  tatgtaaggcacttgcttttgtagtttgcatgcgaccttgtctagagatttaaaatgcct 487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628  tatgtaaggcacttgcttttgtagtttgcatgcgaccttgtctagagatttaaaatgcct 687

                                                                        
Query: 488  tgtacattttaaaacactggtagtttcggagtagcactacagcttttttttttcttttaa 547
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 688  tgtacattttaaaacactggtagtttcagagtagcactacagcttttttttttcttttaa 747

                                                                        
Query: 548  ttaaattgcattttagcttttgttatagaatgactgttggaacaacgtattcaattctcc 607
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748  ttaaattgcattttaggttttgttatagaatgactgttggaacaacgtattcaattctcc 807

                                                                        
Query: 608  tcctgctctgtatatatatatatatatatatgta-a-atatatatatacatatatatata 665
            ||||||||||||||||||||||||||||||| || | ||||||||||| |||||||||||
Sbjct: 808  tcctgctctgtatatatatatatatatatatatatatatatatatatatatatatatata 867

                                                                        
Query: 666  tgta----------------------aatctttattagatattcttttaatttacatttc 703
            ||||                      ||||||||||||||||||||||||||||||||||
Sbjct: 868  tgtatatatatatatgtatatatgtaaatctttattagatattcttttaatttacatttc 927

                                                                        
Query: 704  aaatgttatcccctttcctggtttctcctctgaaaacccctatcctcttccccctccccc 763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  aaatgttatcccctttcctggtttctcctctgaaaacccctatcctcttccccctccccc 987

                                           
Query: 764  tgctccccaatctacccgctcctgcatcctg 794
            |||||||||||||||||||||||||||||||
Sbjct: 988  tgctccccaatctacccgctcctgcatcctg 1018


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 794
Length of database: 1194
Length adjustment: 10
Effective length of query: 784
Effective length of database: 1184
Effective search space:   928256
Effective search space used:   928256
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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