BAC Information

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BAC

Clone NameMSMg01-142P04
Chromosome8 (Build37)
Map Location 49,119,607 - 49,119,892
singlet/doubletsinglet
Overlap genenone
Upstream geneEnpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2
Downstream geneLOC100040113, Dctd, Odz3, 2900073C17Rik, LOC100039866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142P04.T7 (MSMg01no142_p04.b1)MSMg01-142P04.TJ (MSMg01no142_p04.g1)
ACCAG347425AG347426
length1,2772,519
length of high quality
(start - end)
319 (84 - 402)---
definitionCHROMAT_FILE: MSMg01no142_p04.b1 PHD_FILE: MSMg01no142_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:16 2005CHROMAT_FILE: MSMg01no142_p04.g1 PHD_FILE: MSMg01no142_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNGGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCAGCTTAGAAAAGCCGTTTCATATGCACTGTCCCTAAATTCGCA
CAGAGAATAGTGCCTACTTTGTGTCAGCTCCCCTGTGTGACATAGTTGCA
TATTTCATTTTCATTCAACTCTCACTGAGAACCAAAGGTGTCTCGGTCTA
CCTGTCTGTCCCATGACAAAGACAGTGGATGCATTAGCTTTAAGATACAT
CTTTCCTTTTTTAACCTCTTAGCAAGGTTAGGGGTCAAATCCAAGGCCTC
ACCAGCCAGCCAGCCAATCAGGCATTCTACCACTAAGCCCCAGCCCCAGC
CCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGACCCAGCCT
GTTTTTTTTTTGTCCCCTTAGAATCATAGCATAGCTCTCCTCTGGTTGAT
TCCCGTCTGCTATTCTATCATCGTTGGTGCCTGTGACCATAAAGAGTATT
CAGCTTCCCAGATAATCTGTAATGAAACAAGAAAATGACTGCTTTACCTA
ACATGACTTTTATGAGATAAATAAAATTTACAAACCACAGGGTCTTTTTC
CTGGTATGTCTCGCACATGTGTGATGAGAGGATCTGTGCTTTGTGCCTCC
AGATTTCCTGTCCCACTGATAACAGAAAGATCTTTCTTCTTGAAAACCTG
GCATTTGTTACCCCACAATTCGACACTTTAATCCCTCGTAATGCTTGCCT
AGAGTTTTATTATCCATAATGTTTTTCCTTCAAATTTTGCTTTTTTCTAT
CCTTGATCAAATTGATACCTCCCGAATCTTCTAGTCTTTAACTAACATCC
TTCTTTTAAAGAACTTATTCTATCCCTCGTTCAATATTTTGCTTACCTAA
TCTATTTACCACTCACAACTTATAATTTTATTTTTTTTTTCACTAAGTGC
TTATTCTCTTACAAATATTCCCATCTTCTAATGACAATATCTTTTTGCAC
ACTTTTATTATATATAACCTCTCCTCTTATCTCTACTTTCTCCATCATCT
ACTTCACCTAATTTTATCCCATCCAAACTGTCTTCATTGCTTTCTCTTTC
TCTCATCTCCTTTATTTACTACTTTTCTCTTTTATTTATAACATCTCCTC
TACTCTTTTCCATCTTCATCCCTCTTCTCTTCTCACTATTTCTCTTACCT
TTTATATTCCTCTTTTTCCTACTTGCTTCTTGCACTCTTCTTTCTATAAA
CAAATATTCTCTCTATTTTTCTTACTA
ATATCCGTAGATCGACTTTATCCTTGATACAGTCTTNATTATAAGAGAAC
GTNATAAAGTTACGTCTATGGTCTGGTCACTGCATCTGCCTCTTTAACAC
TCTTAAATGCTGGCACAACTCTATCTAGGCATAGTGCATCCACTTGTTGT
TCTACTATTTCTATACTCAATGCAATTCTTCGCTAGTAAGCATACAATGA
TATCTGTTTGTGCTAGTTCCTATGCACTGACCTTATTTTGTTAATATTTC
TATGCTCACATTCACTCCCCTCCACAGTCTGTTGTATCAGCTCGTAGCCT
TTACGTATATTGACAGCAAGTTTTCGTCACTACTCTAGTTCAAGATAGTA
CATACATATTTAATCTTCGCGCTCCGATATACTATCTCCGTCTACTTGAC
TTAGCTATCAGACATACGTTGGTCTTCTAATAACTGCTTCTTCCTTTATT
TATCTTATAATACATCACCAAGTCCTACCTCTTTCCTCCACTATCTTCGC
CTACTTCCTAATTATATTTCGAACATCATGCTATCCACATTGCACACTAG
TCTCATAGCATTATCATTCCTTAATATAATCACTATGACATGTAACTGTT
ATTGTTTTGCTTTCATCATTTCATACATTATCCTCTGTATTCCCCTGGGC
ACGATCAACTCTATATCTCTCTCTGACTTCATTATATACAACCTCCATCT
ATATGTTACTCTATATTCTCTGTCTATCTCTTGCTATATCTCAGATCTCA
TTCTCATCTAATATTCTCATACTCTGTATAATCTTGTGTCATAACTTTCT
TCTTTATCTTATCCTATACTGTATCTCGACTTCTTCTATTATTTTTTTCA
TTAAATATCGCACGCACCCTCGAGTTCTTAATCTGCTTATATATACTCTC
TACATCCATCACTTTCCATTTCATCTATCTATGTATTGCACTTTCCCCCA
CTCATCCATTCCTTACTAATTTGTCTTACCTCTTATTATCTCTCACATTC
TTCTTCTCTCTTTGTTCTTCTTCCCTCTTCTTCTTCATCGTCCATCTCTC
CCTTTTCTTATCTTCTACCTCTTTTCTTTATCTTCTCTTACACGATTTTC
TCTCTTCTCATCTCTCTTACTCCTGTATTTTCATCTCTCTCTTCACTTCT
TCTTCTTCTCTCTTCCTCTCTCTTCTCTTTTTCTCACCTCTTCATCTCTC
TCCATTCTCTCTATTTTCTTTATCTTCTTCTCCATCCTCCTTCTTCATAT
CTTCTCCTGCCCTCTTCTTCTCTTACTTATATCTTCTTTACTATTCTCTT
CTTTCCTTTCTCGTTATCTCCTTTATTCCTTTCTTACCTTTTTCTTTCTC
TCTATTCTCTTCTTCTTCCTTTTTTCTTCTCTTCTTTCCGTCTCTATCTT
TTCTCTTATCTTTGTACATCTTCCTCTCTTTATTTATGCTATGTTAATTT
ATCGTTCAACCCACTAATCTGTTCATATATCGATTATTGCCAAGACTCAC
ATTTGCTCCCATCACCATACACTATTGACATCTCTATTCTGACATTCACT
TCTAGATATACGTTACTATGTTNCATTATATCATCTGTTATCACCCCACA
TTTATACGCTTAATCCATATTACCATTCTCATCTTTAGTGTACACACTCT
ATATCTTTANTGCTCCTGTCTTCTACCCCCCCCCCCTCTCTATGCACTTC
TCATTTACATGTACTTCTATCGTACCTGTATATGCTTCTATATATCTTCT
GTATGAAACTACACCTTATGCNTACTTATCTCTTGCGTCTTCATACTCAT
ACTAAGACTTATATGTTGGTCTACTCTTATCGCCCCATATAATGTCATCT
ATGCTCACACTATCATGACTCTACATAGCTCCCTCGTCATCTATACGTGC
TCTATCTTCTATTCCTGTTATCGAACAGTTCCTGCTACATCCATACGTTA
TTATCTCAATACATAACAGTCTTGCTCTATGCGCACATAACTCATCCACT
CAACGCGTGTATGCAACTCATACATATCTCCTGATCCACTGCTCCTCTAA
CTACCGACTATATACTCAACATTCATAGCTCCATANTNTATAGTGNGAGC
GCCTACACNCAGCGGGCGGAGGTCTGCGCCGCCGACAATATAGATAGTAA
TGTGTGTATGTGCTTGTTGTACACTAGCGAATCTCTCAAGATCATCTAGT
CGTTGTGCACATGCTCAATGACTGACTACTCCTCCTGATACGACTTATTA
TATGTGTACTCCCTACCTACAGCTCTCTCACCTATGCGACACACTCATGC
ACCTCTCCTGTCTCCTCTACGCGCTCACTCTGCTCATACTGCTACATTGC
TGTCCGTCATTCATGTAGACTGCCATCTACGCTTCTGTACCACTACATCA
CGACACTTACATCTCTCTCTCTANTTGATTTGCACTCAGTCTNCTGTATG
ATCATGCTGTGATGACANCTGACGTNCCCTCTGCCATGCTTACTCAGCTA
CGATCATCATACAACGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_p04.b1 MSMg01no142_p04.b1 CHROMAT_FILE:
MSMg01no142_p04.b1 PHD_FILE: MSMg01no142_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:16 2005
         (319 letters)



>mm_chr8_49119407_49120125
          Length = 719

 Score =  468 bits (242), Expect = e-136
 Identities = 275/286 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtccctaaattcgcacagagaatagtgcctactttgtgtcagctcccctgtgtgacat 60
           |||||||||||||||||||||||||||||  || |||||||||||||   ||||||||||
Sbjct: 201 ctgtccctaaattcgcacagagaatagtgtgtagtttgtgtcagctcagttgtgtgacat 260

                                                                       
Query: 61  agttgcatatttcattttcattcaactctcactgagaaccaaaggtgtctcggtctacct 120
           |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 261 agttacatatttcattttcattcaactctcactgagaaccaaacgtgtctcggtttacct 320

                                                                       
Query: 121 gtctgtcccatgacaaagacagtggatgcattagctttaagatacatctttcctttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctgtcccatgacaaagacagtggatgcattagctttaagatacatctttcctttttta 380

                                                                       
Query: 181 acctcttagcaaggttaggggtcaaatccaaggcctcaccagccagccagccaatcaggc 240
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 atctcttagcaaggttaggggtcaaatccaaggcctcaacagccagccagccaatcaggc 440

                                                         
Query: 241 attctaccactaagccccagccccagccccagccccagccccagcc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attctaccactaagccccagccccagccccagccccagccccagcc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)