BAC Information

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BAC

Clone NameMSMg01-143E14
Chromosome8 (Build37)
Map Location 76,803,456 - 76,803,710
singlet/doubletsinglet
Overlap genenone
Upstream geneLarge, LOC100039001, LOC666134, Crry-ps, LOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143E14.T7 (MSMg01no143_e14.b1)MSMg01-143E14.TJ (MSMg01no143_e14.g1)
ACCAG347677AG347678
length759682
length of high quality
(start - end)
107 (42 - 148)585 (74 - 658)
definitionCHROMAT_FILE: MSMg01no143_e14.b1 PHD_FILE: MSMg01no143_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:48 2005CHROMAT_FILE: MSMg01no143_e14.g1 PHD_FILE: MSMg01no143_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXCTANATGCAGAAATCCGCGGAAT
TCTATACCTGACAGGCAGGCAGGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATC
TCTTTCTCTTTNTTTTCCCTTCTTTTCTCCCCTCTCCCCCTTCTCTTCCT
TTCTCATTCCCCTCCTTTCATTCCCATTTTTCTCTCCTCTCCTCTTCTTA
CCCTCTTTCACCCTCCTTCACCCCCACCCCCCCTCTCTTTTCTCCCCCCC
CTTCTCTCTCCTTTTTCGCCCGCCCCCTTTTTCTTTTCCTCCCTTCCCCC
TCACGCCCTCCTCACTCCCTCATTTCTCCCTCCCTTCCCCCCCTCCTTCC
TCTTCTCTTTCTGTTATTTTTTTATTTTTGTGTTAAGTCACTACAATCGC
TGTTTTTNAANTTATTTCTTTTCTCTATTCCCTCCCTTCTTCTCTCTTTC
TCTTTACCTTTTTTTTCCCCTCTCTTTCCCCTCTCTCCCCCCCCCCTCCC
ATTCTTTCCCTCCCTTTTTTCTTTTTTTTTTCTCCCCCTCCCCCCTTCCT
TTTTTTTTCTCTTTTTTTCTTCTTCTTTCTTTTTTTTTCCCCCCTTTTTC
CCTCTTCCTTTTTCCTCCCCTCATTTTCATTTCCTTCCCCCCTCCCCCTT
CCTCATCTTCTTTTTTTTCTTCCATTCTTCCCCCTTTACTACCTATCTTT
TCTTTCTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGTTCAGATTAGGAACCATAGATGC
GAGCATCAGCAACAGAATGCAAGAGATGGAAGTGAAAATGTCAGGTGCAG
AAGATTCCATAGAAAATATGGACACAACAATCAAAGAAAATTCAAAATGC
AAAAAGATCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGA
CCAAACCTACGGATAATATGAGTGGATGAGAATGAAGATTTTCAACTCAA
AGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATC
TAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAAT
AGATGCCTAAATCCCTACCCCCCGTCTCCATTCCAATTCTTTTACCACTG
AATAAGAAGTTCCCTCTGTTGGGTGTCACCATAGTGTGTTTTCCCCCAAA
TAAATGAACCAATACAAACACATTAATATTAGCTGAAGTTATAATGCCAC
TCAGATTTTTTTTTTATAATTCACGTAATCAACCAGCTCTGTTCTAGAAT
TCTCANATGGATAGTGTGCTATCTTTGGNAATCATATATTCCATAGTTTT
CATTGATTTTGGTCACCTTAATAGTTTTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_e14.g1 MSMg01no143_e14.g1 CHROMAT_FILE:
MSMg01no143_e14.g1 PHD_FILE: MSMg01no143_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:48 2005
         (585 letters)



>mm_chr8_76802926_76803910
          Length = 985

 Score =  451 bits (233), Expect = e-131
 Identities = 249/255 (97%)
 Strand = Plus / Plus

                                                                       
Query: 331 tgcctaaatccctaccccccgtctccattccaattcttttaccactgaataagaagttcc 390
           ||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgcctaaatccctactctttgtctccattccaattcttttaccactgaataagaagttcc 590

                                                                       
Query: 391 ctctgttgggtgtcaccatagtgtgttttcccccaaataaatgaaccaatacaaacacat 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctctgttgggtgtcaccatagtgtgttttcccccaaataaatgaaccaatacaaacacat 650

                                                                       
Query: 451 taatattagctgaagttataatgccactcagattttttttttataattcacgtaatcaac 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 taatattagctgaagttataatgccactcagattttttttttataattcacgtaatcaac 710

                                                                       
Query: 511 cagctctgttctagaattctcanatggatagtgtgctatctttggnaatcatatattcca 570
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 711 cagctctgttctagaattctcaaatggatagtgtgctatctttggtaatcatatattcca 770

                          
Query: 571 tagttttcattgatt 585
           |||||||||||||||
Sbjct: 771 tagttttcattgatt 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)