Query= MSMg01no143_e17.b1 MSMg01no143_e17.b1 CHROMAT_FILE:
MSMg01no143_e17.b1 PHD_FILE: MSMg01no143_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:49 2005
(636 letters)
>mm_chr8_30038398_30039434
Length = 1037
Score = 1162 bits (601), Expect = 0.0
Identities = 625/635 (98%), Gaps = 6/635 (0%)
Strand = Plus / Minus
Query: 6 gaattcaattc---attatcacattgtttgtttagagatattaccagagtttagagctaa 62
||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gaattcaattcaaaatga--acattgtttgtttagagatattaccagagtttagagctaa 580
Query: 63 aggattccccacacagtgccaatcagaagacttctgctctgatctaagggctgtagttcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aggattccccacacagtgccaatcagaagacttctgctctgatctaagggctgtagttcc 520
Query: 123 tgtgactccttcagttcacagtattttgtaatgcacttactcactggtttgtcataaagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgtgactccttcagttcacagtattttgtaatgcacttactcactggtttgtcataaagg 460
Query: 183 atattacacataggacactgctgactgccacagggtagtgtggagctcagagctcccaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 atattacacataggacactgctgactgccacagggtagtgtggagctcagagctcccaga 400
Query: 243 cccttcctgtccctacttagttctttaaggttcttgtggatctaccttgtagaggtagaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cccttcctgtccctacttagttctttaaggttcttgtggatctaccttgtagaggtagaa 340
Query: 303 tcaattacatgactaccatagaaaccaattcaaacttcagcttctctctgttatccaaag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tcaattacatgactaccatagaaaccaattcaaacttcagcttctctctgttatccaaag 280
Query: 363 gaggtgggtcccaccattctcatcatgtcctgtgctctctgattctccattctgaagtta 422
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gaggtgggtctcaatattctcatcatgtcctgtgctctctgattctccattctgaagtta 220
Query: 423 cttaggagctcctgccctcccttccacttcatttccttccctttcttcttttctctttct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 cttaggagctcctgccctcccttccacttcatttccttccctttcttcttttctctttct 160
Query: 483 ctctttctttcataggtctctctcggtgatattgacataaatatcatcctataac-tctg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 159 ctctttctttcataggtctctctcggtgatattgacataaatatcatcctataacttctg 100
Query: 542 tcacatgacagtgcccagggcccaacaaatgtgagattgatcactgtcacatctttacca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 tcacatgacagtgcccagggcccaacaaatgtgagattgatcactgtcacatctttacca 40
Query: 602 tttagttcagggtagatttgctcagtgtaagacat 636
|||||||||||||||||||||||||||||||||||
Sbjct: 39 tttagttcagggtagatttgctcagtgtaagacat 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1037
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1027
Effective search space: 642902
Effective search space used: 642902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_e17.g1 MSMg01no143_e17.g1 CHROMAT_FILE:
MSMg01no143_e17.g1 PHD_FILE: MSMg01no143_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:49 2005
(348 letters)
>mm_chr8_29896718_29897465
Length = 748
Score = 586 bits (303), Expect = e-172
Identities = 329/341 (96%), Gaps = 7/341 (2%)
Strand = Plus / Plus
Query: 1 tggggatttgaacgttggtcctcttgtttgtacatcaagtactctaaacacctggctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggggatttgaacgttggtcctcttgtttgtacatcaagtactctaaacacctggctctc 260
Query: 61 tccgtagcccatagaatactcattttaaggaaggggagttgccacaattgaaatactgtg 120
||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccatagccaacagaatactcattttaaggaaggggagttgccacaattgaaatactgtg 320
Query: 121 tgaagggagggaggaagccttagaactgctccttaaactgtaaagtaccccgtggaaggg 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tgaagggagggaggaagccttagaactgccccttaaactgtaaagtaccccgtggaaggg 380
Query: 181 agatgggagtttcagggctttgtcaaaattcattaaaagaatttctcatagtaaagaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgggagtttcagggctttgtcaaaattcattaaaagaatttctcatagtaaagaaat 440
Query: 241 cataacttacaaaaaaccagcttacttctttttaaagtctacaatcttcacaatttttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataacttacaaaaaaccagcttacttctttttaaagtctacaatcttcacaatttttat 500
Query: 301 tttgtatg------tgcgtgtgtgtgtgggggggg-agagg 334
|||||||| || |||||||||||||||||| |||||
Sbjct: 501 tttgtatgcgtgtgtgtgtgtgtgtgtgggggggggagagg 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space: 250521
Effective search space used: 250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
