BAC Information

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BAC

Clone NameMSMg01-143K18
Chromosome8 (Build37)
Map Location 33,610,816 - 33,611,108
singlet/doubletsinglet
Overlap genenone
Upstream geneEG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143K18.T7 (MSMg01no143_k18.b1)MSMg01-143K18.TJ (MSMg01no143_k18.g1)
ACCAG347956AG347957
length687711
length of high quality
(start - end)		619 (69 - 687)296 (71 - 366)
definitionCHROMAT_FILE: MSMg01no143_k18.b1 PHD_FILE: MSMg01no143_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:17 2005CHROMAT_FILE: MSMg01no143_k18.g1 PHD_FILE: MSMg01no143_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TACCAGGTTTTCAAAGAAGAGCTAACACCAATACTCCTCAAACTAGTCCA
CAAAATAGAAACAGAAGCAACACGAATTAATGTATTCTAAGTCTTAAATT
CAAGGGTACTCTGGCACCTAAACCACACAAACACCCAACAAAGAAAGAGA
ACTTCAAACCAATTTCACTTATAAATATTGATGCAAAAGTACTCAATAAA
ATTCTCATAAACTGAATCCAAATCACCTCAAAACCATCATTCACCACAAT
CAAGTAGGCTTCATTCCATGGATGCAGGAATGGTTCAATATATGAAAATC
CATCAACGTAATCCACTATATAAACAAACTCAAAGAAAAAAAAATCACAT
GGTCATCTCATTACCCCCCCAAAAAGCCTTTGACAAAATGTAACAACCCT
TCATGTTAAAAGTCTTAGAGAGATCAAGAATTCAAGGCCCATACCTAAAC
ACAATAAAAGCAATATACAGCAAACCAACAGCCAATATCAAATTAAAATG
GAGAGAAACTTGAAGCAATCCCACTAGGTTGCCCACTCTCTTGCTATCTG
TTCAATATAGTACTTGAAGTTCTAGCTAGAGAAATAAGACAACAAAAGGA
GATCAAGGGGATACAAATTGGAAAGGAAAAAGTCAAG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACACTGAGAGTCTCTGGCTTCCTATTCTGTTAGCAAAACAAAGATC
CTAGATTATTTCAAAGAATTAAAACCAGTGTTAATTGAGTATTTTTATTG
GAAGCTAAGTATCTTAATTTATAGTCCCAGAGACTTTCTCAACTCAACAG
AGTCAGAACTGATTCTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTT
TTGTTTTGTTTTGNCCCCCCCCCCCCCTTCTTCNTCTCTTTTTTTCCTTT
TCCTTTTTTCCCCCCCCCCTTGTTGNNTNNNNNTNNNNCCNNCCNNCCCC
CCCCCCCCTTTCTCTTTTCCCCCCTTCTTCCTCCCTCTCTCCTTCTCCCC
CTCTTCTTTTTTCCTCTCTTTCCNCTTCCCCCTTTTTTTCTTCCCCCCCC
TCTCTTTTTTTTTTCCTTCCCGCCCCCTTNGTCCCCTTCCTCCGTTACTT
CCGCGGCTGCCCTGTGTTGCNCCTGCTTCCCCTTTGTCCTCTTTGGCGGG
TTGTGGTGCTCCCTTTCTTTCCGCCTTCGCCTTTGTTTTCTTTGCTGTCT
TGTTGGTCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_k18.g1 MSMg01no143_k18.g1 CHROMAT_FILE:
MSMg01no143_k18.g1 PHD_FILE: MSMg01no143_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:17 2005
         (296 letters)



>mm_chr8_33610616_33611311
          Length = 696

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatc 260

                                                                       
Query: 61  atcagggaaatgcaaatcaaaacaacactgagagtctctggcttcctattctgttagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcagggaaatgcaaatcaaaacaacactgagagtctctggcttcctattctgttagcaa 320

                                                                       
Query: 121 aacaaagatcctagattatttcaaagaattaaaaccagtgttaattgagtatttttattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaagatcctagattatttcaaagaattaaaaccagtgttaattgagtatttttattg 380

                                                                       
Query: 181 gaagctaagtatcttaatttatagtcccagagactttctcaactcaacagagtcagaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagctaagtatcttaatttatagtcccagagactttctcaactcaacagagtcagaact 440

                                                                
Query: 241 gattcttgttttgttttgttttgttttgttttgttttgttttgttttgttttg 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattcttgttttgttttgttttgttttgttttgttttgttttgttttgttttg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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