BAC Information

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BAC

Clone NameMSMg01-144H18
Chromosome8 (Build37)
Map Location 127,183,386 - 127,183,627
singlet/doubletsinglet
Overlap gene2310022B05Rik
Upstream geneRhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9
Downstream geneTtc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144H18.T7 (MSMg01no144_h18.b1)MSMg01-144H18.TJ (MSMg01no144_h18.g1)
ACCAG348545AG348546
length740758
length of high quality
(start - end)
334 (74 - 407)242 (72 - 313)
definitionCHROMAT_FILE: MSMg01no144_h18.b1 PHD_FILE: MSMg01no144_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:20 2005CHROMAT_FILE: MSMg01no144_h18.g1 PHD_FILE: MSMg01no144_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATGCCGCGGAA
TTCAGTAAGAATGTCCACTATTCAGTAACATTCAAATTTACTTCTTTTTT
TTTTTTTTAAATATTTATTTATTTATTATATGTAAGTACACTGTAGCTGT
CTTCAGATACTCCAGAAGAGGGCATCAGACTTCCTTACGGATGGTTGTGA
GCTTCCATGTGGTTGCTGGGACCTGAACTCGGGACCTCTGGAAGAGCAGT
CAGTGCTCTTAACCACTGAGCCATCTCGCCAGCCCCCTCAAATTTACTTC
TAGTAGAGGTGGTGAAACTAATTATGCATTACAAAGAACAGAGCTAGCTA
TTGCTCAGGGCTGGTCTGCAGAGTGATTACTTAGGACAGTAGCCAGTCTC
ACCCAAACAAGGCCCCCCACAATGGCCTAGCTAATAGGTGGGTTTACCAT
GAGATAGAGCTAGGGAATCCCACTGAGACAGAGATCTTCTCTACAGCCAG
GTATATCAGGCTACATTGCATATTAGAAGCAAGTTGGTGAATTCTTCTGA
CCAATGGAGATTCTCCACAGATACTTATAAGATTATCCCAGTTACACTCA
TATCAGAATTTATCAGGGCCTAGGAAACAGGGGGGATGCGCTCTTGTTTC
TCTCCTCCCTCCCTTACTCCCTCTTCCTCCCTCTCCTGTTTTCTCCCCTT
TCCTCTTTTTCTCCTCCCTCTTTTTCCTATTCTTCTTTTA
GATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGATTTAGGAGGGGTCTTAAGCAGAGA
GGGCTAAAAGCACTAGGGAGGCCTGGAGCTCCTACAGGAGGGTTGTGTGG
GAGGCAGCTGATCTGCTGAATTGCTGGTGAGGTTTGGAGCTATCTGGCTC
CAGGGTCTTAAAAATCCAGCCTCTAGAATCCAGGTCAAGGGCTATGGAGC
TGGCTGACCTACACCATCACTCCTGCTCAGCCCCACCCACTTCATGGAGA
GGTGGCAGAGGCAAGGGGATTCTCTTTTATACAAGAAAAACCACCGTAGG
AGCTCCCAGCATCCCTGCACAGGGTCTGTTTAGACCTAATAAAATGGTTG
TCTTTGTTTTTCTNACCCCACCAATGTACTTAGATCCTGCTGCTTGTGTC
TAGCATTTGCCCCCGCCACCATTATTTCTCCTGTTTTGATTCCTCTCCCT
TCTCATTTTCCACTTCGTTCTTTCTTTTCCTCATTTTCCCTGTTTTTCCC
TTACTCTTTCTCCCTCTTTCTTTGCCACCTTCCGTCCCCTCCCTTTTCCT
TTTTCTCCCATCTCCTTTCCTCCTGTTTACTTTTTCTCCTCTCATTTCTG
TACCTCTCTTTTTTTCCTCCTCCTCTTCCTTCTTCTTCTCCTTTTCCCCT
CTTCTCTCTCTTCCTCTTCCTCCCTTTCCCTTCCCTCCTTCTTTCTTTCT
TTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_h18.g1 MSMg01no144_h18.g1 CHROMAT_FILE:
MSMg01no144_h18.g1 PHD_FILE: MSMg01no144_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:20 2005
         (242 letters)



>mm_chr8_127183186_127183827
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggatttaggaggggtcttaagcagagagggctaaaagcactagggaggcctggagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 caggatttaggaggggtcttaagcagagagggctaaaagcactagggaggcctggggctc 260

                                                                       
Query: 61  ctacaggagggttgtgtgggaggcagctgatctgctgaattgctggtgaggtttggagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacaggagggttgtgtgggaggcagctgatctgctgaattgctggtgaggtttggagct 320

                                                                       
Query: 121 atctggctccagggtcttaaaaatccagcctctagaatccaggtcaagggctatggagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctggctccagggtcttaaaaatccagcctctagaatccaggtcaagggctatggagct 380

                                                                       
Query: 181 ggctgacctacaccatcactcctgctcagccccacccacttcatggagaggtggcagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctgacctacaccatcactcctgctcagccccacccacttcatggagaggtggcagagg 440

             
Query: 241 ca 242
           ||
Sbjct: 441 ca 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)