BAC Information

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BAC

Clone NameMSMg01-144J24
Chromosome8 (Build37)
Map Location 120,237,185 - 120,237,822
singlet/doubletsinglet
Overlap geneHsd17b2
Upstream geneCdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik
Downstream geneMphosph6, Cdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144J24.T7 (MSMg01no144_j24.b1)MSMg01-144J24.TJ (MSMg01no144_j24.g1)
ACCAG348646AG348647
length740742
length of high quality
(start - end)
248 (74 - 321)638 (71 - 708)
definitionCHROMAT_FILE: MSMg01no144_j24.b1 PHD_FILE: MSMg01no144_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:30 2005CHROMAT_FILE: MSMg01no144_j24.g1 PHD_FILE: MSMg01no144_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTATACGACTCCTATATTTCGAAGTCGGCGGAATTCA
GTACTCGTTTCCGCAAAAAGTGGATCACCCATAGTCATGACTGGAGTGCT
GACTCACGCTCCAGCAACAGGCAGACTTTGAGATGGTCCTACTCAGCACA
GGTGTACCTTGAAAAGGTCATGCCATGGGAAAGAAGCCAGACCAGAGACC
ATGTTCCTTGATTCCATGTATATGAAATATCCAGAATTGTTGAGTGCAGA
GAAGTCACGTGCAGTTTAGTTGTTGCTCCTGGCAATGCGGGGCTGAAAAA
GGATGGGGTGGGGTGGCGTGTACATTGAAGGTCCAGGTTTTTCGCTGTGT
CACAGAATATTCTAAGATTGGCTGTGCCCATGGCCGTGCATATTTGTGAG
GCTTTACAACTCACCCCACACCTCACTCGAAGTGGACGGCCTTCTCTGGT
ATGTGTGCTATGAATATTATCTTTTTCCTCGTTTTGTTTTGTTTCGTTTT
GTTTTGCCTTCCATGGCTCTATTCTTCTGCGCTTACCTGACCATCTCTAC
CTCTCTCCCTATACCTATCCGACTCCTGCCTGTTTCCCCTTCTTTTTGCC
TCTGCCCCCTAGTGTTCCATAATCTCCCTTCTCATCTCCCTACATGTTTT
CGCTCTCCTCCCTTTCTTTCTTTTCTTCCCTTTCTTCCTTCTTTCTCCCT
TTCTCATTTTTCTATCACTCTTCTCTCTCATCTTCCTCTT
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGGTCCCCAGATAAGAAACCAGAAGTAA
TGAGTGTGTCCTAAGCTTGAATTCTGCTTCTTATACAGTCCAAGATGATT
CCCCCAGAGGCCTAACTGCCAGGTAATTTTAGATATTTCAAGTGGATTGT
TAATGCTAGCCATGACAGGGAGGGCGGCAAGCCATGACCTCAGCCTCGGG
CAAGAATAGCTGCACCTACCCAATGAGATTGGGTGTGCATGGTGTTAGGG
AAAGAAGTGGCTTGGACAGGACTTTGAGCACTGCTGTGTTCTCTGTGGAG
GCCTAATGTTATCTTTAATTCCCTACCAGGGATTTGCAAGAAACAACAAC
CATGTCCAGGCTCACGCCCGACATCAGGTACGCTGGACTTCTAGAACTGG
GTACCCAAGCACAAGAGGGCTTAAAGACGAGCCTACACAGTGAGTCTAAC
ACGGTGGTTCTCAGCCTTCCTAATACTGTGACCCTTTTTAGTACAGTGCC
TGATGTAGTGATGTGCCCCAAACATAGAATTATTCTGTTGCTACTTCATA
GCTCTAATTTTTGCTTTTGTCGTGAATTGTAATATAAATATCTGATGTGC
AGAATATCTGATGTATGACCCCTTATAAGGTCATGACCCACAGGTTGAGA
ACCGCTGATCTGACACGTGATGAGGGTTTGATGCCCAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_j24.g1 MSMg01no144_j24.g1 CHROMAT_FILE:
MSMg01no144_j24.g1 PHD_FILE: MSMg01no144_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:30 2005
         (638 letters)



>mm_chr8_120237045_120238082
          Length = 1038

 Score = 1203 bits (622), Expect = 0.0
 Identities = 634/638 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggtccccagataagaaaccagaagtaatgagtgtgtcctaagcttgaattctgcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 actggtccccagataagaaaccagaagtaatgagtgtgtcctaagcttgaattctgcttc 719

                                                                       
Query: 61  ttatacagtccaagatgattcccccagaggcctaactgccaggtaattttagatatttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttatacagtccaagatgattcccccagaggcctaactgccaggtaattttagatatttca 659

                                                                       
Query: 121 agtggattgttaatgctagccatgacagggagggcggcaagccatgacctcagcctcggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 agtggattgttaatgctagccatgacagggagggcggcaagccatgacctcagcctcggg 599

                                                                       
Query: 181 caagaatagctgcacctacccaatgagattgggtgtgcatggtgttagggaaagaagtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 caagaatagctgcacctacccaatgagattgggtgtgcatggtgttagggaaagaagtgg 539

                                                                       
Query: 241 cttggacaggactttgagcactgctgtgttctctgtggaggcctaatgttatctttaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cttggacaggactttgagcactgctgtgttctctgtggaggcctaatgttatctttaatt 479

                                                                       
Query: 301 ccctaccagggatttgcaagaaacaacaaccatgtccaggctcacgcccgacatcaggta 360
           |||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct: 478 ccctaccagggatttgcaagaaacaacaaccatgtccaggctcatgcctgagatcaggta 419

                                                                       
Query: 361 cgctggacttctagaactgggtacccaagcacaagagggcttaaagacgagcctacacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cgctggacttctagaactgggtacccaagcacaagagggcttaaagacgagcctacacag 359

                                                                       
Query: 421 tgagtctaacacggtggttctcagccttcctaatactgtgaccctttttagtacagtgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgagtctaacacggtggttctcagccttcctaatactgtgaccctttttagtacagtgcc 299

                                                                       
Query: 481 tgatgtagtgatgtgccccaaacatagaattattctgttgctacttcatagctctaattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgatgtagtgatgtgccccaaacatagaattattctgttgctacttcatagctctaattt 239

                                                                       
Query: 541 ttgcttttgtcgtgaattgtaatataaatatctgatgtgcagaatatctgatgtatgacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ttgcttttgtcgtgaattgtaatataaatatctgatgtgcagaatatctgatgtatgacc 179

                                                 
Query: 601 ccttataaggtcatgacccacaggttgagaaccgctga 638
           ||||| ||||||||||||||||||||||||||||||||
Sbjct: 178 ccttaaaaggtcatgacccacaggttgagaaccgctga 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)