NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGAGCTATCCGGTGAGAGTTAAATGCCCAAAAAGCAAACCCTG
AATAAAGGGTATCACAGTTAGACCTGGGTAATGATAAAGAAGTGGTAAAG
AGGGGTTTTTTTAGTACCCTGAAAGCTGTTAGAAATTAACTATCAACAAA
ATGGTTAAAACGAGGTGCTGAAGAGCAAGCCAAGTGTCTTAGTCAAGGTT
TCTATTCCTGCACAAACATCATGACCAAGAAACAAGTTGGGGAGGAAAGG
GTTTATTCGGCTTACACTTCCATACTGCTGTTCATCACCAAAGGAAGTAA
GGACTGGAACTCAAGCAGGTCAGAAAGCAGGAGCCGATGCAGAGGCCATG
GAGGGATGTTCTTTACTGCCTTGCCTCCCTTGGCTTGGCTCCCATGGCTT
GGGTATTACAGTTAGGCCTGAGTAATGATAAAGAAGTGGTAAAGAGGTTT
TTTTAGCACCCTGAAAGCTGTTAGAAATGAACTATCAACAAAATGGTTAA
CAGTGGGTGCGAAGAGCAAGACAAGTGAATTCAATGTAGTATTATGTCAG
GGCTCTGGAGAACTCCAGTAGGGAGGTCCTGTGTTGGGAGGACAAGGCCC
CATACTTCTAAATATGTGTTAAATCAATGAAGGAAAGCATCATGAAGGCC
CTCATTAACTTG

CCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGCAAGGTGCAGATAACCCTAGAC
ACAGAGGCACAGAATCCCATCTACAACCCTGAAATACAAAGGTGTCCCTG
TGCACCCAGTTCTATGCACCTGTGTGGACTTCCATTGGCTACAAGGTTGT
GGGAAGAAGCAGCAAGAGGCTTGCAGCAAACAGGTGCCTCCAATAAGTTT
TCCTACAAAGGAAAGGAATTTGCCCTAAGGAGGTTCAGTGGGTGGAGGTC
ACATGGCCAGGTTGCCATTTTGCAGTATGAGGAAATGTATGAGGAGAACA
GATTCCATCCTGTTCTGTTTGTTGGTTTACTTAGTTGGTTTTGGTGTTGG
TGTTGGTATTGGTGCCCCCCCCTTTTTTTATTTTTTTTTTTTTCCTTCCA
TCCTCTTCATCTTATTCATCTTCCATCATTTTCATTCATCCCTTTCCTTT
CTTTCTCTTTTACTTCCAACCATCCTTTTCTTACTTTCCTATTCCTTCTC
CTCCTTTCTACTCTTCCTCTTTCTTTTATCCTTTTTCCTTTTTTCTCCCC
TCTCTCTCACACGTTCTCTCCTTTCATCTTCCTTTTCTTTCTCCCGTTAT
CACTTCTATTCTTTCTCTCTTCTTCTCTTTTATCCCCTTACCTTCTTCTA
ACTCTCCACTTTCCAATCTAACTCCCCTTCTTC

Query= MSMg01no145_a14.b1 MSMg01no145_a14.b1 CHROMAT_FILE:
MSMg01no145_a14.b1 PHD_FILE: MSMg01no145_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:01 2005
         (626 letters)



>mm_chr8_58094593_58095618
          Length = 1026

 Score =  398 bits (206), Expect = e-115
 Identities = 218/222 (98%), Gaps = 2/222 (0%)
 Strand = Plus / Minus

                                                                       
Query: 406 ggtattacagttaggcctgagtaatgataaagaagtggtaaagaggtttttttagcaccc 465
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 826 ggtattacagttaggcctgggtaatgataaagaagtggtaaagaggtttttttagc-ccc 768

                                                                       
Query: 466 -tgaaagctgttagaaatgaactatcaacaaaatggttaacagtgggtgcgaagagcaag 524
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 767 atgaaagctgttagaaatgaactatcaacaaaatggttaacagtgggtgctaagagcaag 708

                                                                       
Query: 525 acaagtgaattcaatgtagtattatgtcagggctctggagaactccagtagggaggtcct 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 acaagtgaattcaatgtagtattatgtcagggctctggagaactccagtagggaggtcct 648

                                                     
Query: 585 gtgttgggaggacaaggccccatacttctaaatatgtgttaa 626
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gtgttgggaggacaaggccccatacttctaaatatgtgttaa 606



 Score =  215 bits (111), Expect = 9e-60
 Identities = 168/189 (88%), Gaps = 10/189 (5%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcctgagctatccggtgagagttaaatgccca-aaaagcaaaccctgaataaagggt 64
           |||| |||||||||  ||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct: 883 aattgctgagctatatggtgagagttaaatgcccacaaaagcaaaccctgagtaaaaggt 824

                                                                       
Query: 65  atcacagttagacctgggtaatgataaagaagtggtaaagaggggtttttttagtaccc- 123
           || |||||||| |||||||||||||||||||||||||||||||  |||||||||  ||| 
Sbjct: 823 attacagttaggcctgggtaatgataaagaagtggtaaagagg--tttttttag--cccc 768

                                                                       
Query: 124 -tgaaagctgttagaaattaactatcaacaaaatggttaaaacgagg-tgctgaagagca 181
            ||||||||||||||||| ||||||||||||||||||||| | | || |||| |||||||
Sbjct: 767 atgaaagctgttagaaatgaactatcaacaaaatggttaaca-gtgggtgct-aagagca 710

                    
Query: 182 agccaagtg 190
           || ||||||
Sbjct: 709 agacaagtg 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)