BAC Information

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BAC

Clone NameMSMg01-145B05
Chromosome8 (Build37)
Map Location 77,972,728 - 77,973,271
singlet/doubletsinglet
Overlap gene1700007B14Rik
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229
Downstream geneLOC666036, LOC100039185, EG631594, LOC666226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145B05.T7 (MSMg01no145_b05.b1)MSMg01-145B05.TJ (MSMg01no145_b05.g1)
ACCAG348973AG348974
length735701
length of high quality
(start - end)
94 (189 - 282)544 (72 - 615)
definitionCHROMAT_FILE: MSMg01no145_b05.b1 PHD_FILE: MSMg01no145_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:04 2005CHROMAT_FILE: MSMg01no145_b05.g1 PHD_FILE: MSMg01no145_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTACAATTTTCCTTTTTTATCTAGGAGTTAAGGCAAAAACAATAG
CTTCTTTTCACCCTCTACAAGTGAGTGTATGTATTGTTGTTTTCGAGTGT
TGTTGTTGCTGCTATATGATGCATGAGCAGATATGAGTCTACATTAACCA
CTGGCCACTGCAAAAACAAGTTGCTCTAACTACAGATGACAGGCGCACAA
ATCTATAATTATAAACATAATATTTCTAAGGCATTCTGCCATACCCCTGT
TTCACAACGCTGAAATAAAAATTTCAAACTCTAAGGCCTACAAGGTCCAT
AGCTATGTATTTTATATTATCAGGCATGACCTCCCTCCTGTGAGGTGGCC
TCAGATCCAATCATAGCGTGTCTACCCCATCACGGTCAGGCCACACATCC
CACCTGGGCCCTATCTACTTCCTCAGTCACAAATTTTTAGAATGGACCGC
CCCCATTCTTGGCCAGACCCACTGAAAAAACTTTCTTCCCCCCATCTATC
TTCCACATTACCCTTCCAACCACAATCTACAAAAATCCCCAACCTCTATT
TACAACTCCGATATTCCCCTATAGCCCGCATTTACTACACTGACCTGGTG
TCCCCCTCACAAAAAAACCCCCCCCCCACCCCTGCTCTCCCGCCCCCCCC
CCACTCCGTTTCCTACCAAACTCAAATCTTCCCCG
NCCATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGTGTTGTGAGGAGTGAGAGGAGAGGGC
ACTAATGGGGCCTGGTAGGGCAACTGTGATTGGGAGAGTGCCCTGGGGGC
GGAGCTAAGGAGACAACAAGGGTGGGGCTAGTGTGACTCCACAACTACTA
AAGAGGCTTGAAGGTTCTCTAGCCACAGAAGGTGACCCTGAGCCTGAAGG
TAAGGTGAACGTGGTCCTGGGGACTTTAGGATTCTCTTGGGTGAGGGTAG
AGAGAAATTTGAAAAAAAAAATGCGTATTTACATTACCCCGATAATAGTA
TTTTACACAGTAGAATGTACTATAAAAGTTTGAATTGCATTTCAACGTGA
TAGAAAATAGAATAATGTCTGGCTCTTTCAGGTTTTTCATTCTGTGCACT
CTTGTATGTGCTAAGTAGGCAGTTGGCCTCACGTTGATCTAGGCACACGT
GCTACCACAGCGCACATTTTTGGGTGGGCTTAAAGCTGAAACAGTATCTT
CTGTGCTGCCACCCCCGGAAGTCTCACACGTTTACACTCAGCACCACAGC
ACCTTTGCTGATTCTCAACATGCGTTTCCAGTCTTTCTGTATGGCCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCACTCTCTCTC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_b05.g1 MSMg01no145_b05.g1 CHROMAT_FILE:
MSMg01no145_b05.g1 PHD_FILE: MSMg01no145_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:04 2005
         (544 letters)



>mm_chr8_77972528_77973471
          Length = 944

 Score = 1036 bits (536), Expect = 0.0
 Identities = 542/544 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgttgtgaggagtgagaggagagggcactaatggggcctggtagggcaactgtgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgttgtgaggagtgagaggagagggcactaatggggcctggtagggcaactgtgatt 260

                                                                       
Query: 61  gggagagtgccctgggggcggagctaaggagacaacaagggtggggctagtgtgactcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagagtgccctgggggcggagctaaggagacaacaagggtggggctagtgtgactcca 320

                                                                       
Query: 121 caactactaaagaggcttgaaggttctctagccacagaaggtgaccctgagcctgaaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caactactaaagaggcttgaaggttctctagccacagaaggtgaccctgagcctgaaggt 380

                                                                       
Query: 181 aaggtgaacgtggtcctggggactttaggattctcttgggtgagggtagagagaaatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggtgaacgtggtcctggggactttaggattctcttgggtgagggtagagagaaatttg 440

                                                                       
Query: 241 aaaaaaaaaatgcgtatttacattaccccgataatagtattttacacagtagaatgtact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaaaaaatgcgtatttacattaccccgataatagtattttacacagtagaatgtact 500

                                                                       
Query: 301 ataaaagtttgaattgcatttcaacgtgatagaaaatagaataatgtctggctctttcag 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataaaagtttgaactgcatttcaacgtgatagaaaatagaataatgtctggctctttcag 560

                                                                       
Query: 361 gtttttcattctgtgcactcttgtatgtgctaagtaggcagttggcctcacgttgatcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttttcattctgtgcactcttgtatgtgctaagtaggcagttggcctcacgttgatcta 620

                                                                       
Query: 421 ggcacacgtgctaccacagcgcacatttttgggtgggcttaaagctgaaacagtatcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 ggcacacgtgctaccacagcgcacatttttgggtgggcttaaagctgaaacaggatcttc 680

                                                                       
Query: 481 tgtgctgccacccccggaagtctcacacgtttacactcagcaccacagcacctttgctga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgctgccacccccggaagtctcacacgtttacactcagcaccacagcacctttgctga 740

               
Query: 541 ttct 544
           ||||
Sbjct: 741 ttct 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)