BAC Information

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BAC

Clone NameMSMg01-146I18
Chromosome8 (Build37)
Map Location 103,282,979 - 103,283,627
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146I18.T7 (MSMg01no146_i18.b1)MSMg01-146I18.TJ (MSMg01no146_i18.g1)
ACCAG350056AG350057
length1,2641,229
length of high quality
(start - end)		537 (92 - 628)649 (145 - 793)
definitionCHROMAT_FILE: MSMg01no146_i18.b1 PHD_FILE: MSMg01no146_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:27 2005CHROMAT_FILE: MSMg01no146_i18.g1 PHD_FILE: MSMg01no146_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATGTCTTTTNTTNGCAGTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTCACCTGAGGAATACCCCTTTAAAGATAAGCACCTGAA
AAAATGTTCAACATCCTTACCCATCAGGGAAATGCAAACCCCAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGTTGGGGAGGATGTGAAGAAAGGGGAACACTCCTCCATTG
TTCGTGGGATTGCAAGCTTGTACAATCACTCTGGAAATCAGTCTGGCGGT
TCCTCAAAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTC
CTGGGCATATATCCAGAAGATTTCCCAACTGTTAAGAAGGACACATGCTC
CACTATGTTCTTAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAC
GCAGATGCCCCTCAACAGAGGAATGCATACAGAAAACGTGGTACATTTAC
ACAATGGAGTACTCCTCAGCTATTAAAAACAATGAGTTTATGAAATGTTT
AAGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCAATC
ACAAAGGAACTCGCACAATATATACTCACTAATAAGCGGATATTAGCCCA
GACACTTAGGATACCCAAGATATAAGATACAATTTGCAAAACAAATGAAA
CTCAAGAAGAACGAAGACCAAATTGTGGAGACTTTGCCCCTTCTTAGAAA
TGGGAACAAAACACCCATGGAAGGATTTACAGAGACAAAATTTGGAGCTG
TGACGAAAGGATGGACCATCTAGTGATTGCCATATCCAGCGATCCATCCC
ATAATCAGCTTCCAAACGCTGACACCATTGCATACTCTATCAAGATTTTG
CTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACTATGCCAGGGCCTA
GCAAACACAGATATGGATGCTCTCAGTCAGCTTTTGAATGTGTCTCACGG
CCCCTCATGTGAGGACTTTAAGGACCTACCTAGGAATTATAAGGGAATGT
GCCCCTTTTAGGGGTAAANTTTTATGTATTAAACTTTACCCCCCAAAGTT
TTGGTTCTAGCTGCTTATGTTTCTAAAGAAAGCCCCCCTCCCTCCTTCTC
TTGAATAAAGGACCTTTGTTATTTCTCAATTTATTATCTCCTTTTGTTGA
TTTCCTGTGTCCATACCTGTATGGTGTGTTTGTGTTATTTCTCATTTACT
CTTCTTCTTTATTT

CCTTTTTCTTTTTTTAAGATGTGAGCCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTCAGATGTTGTACAGTCAA
GAAACAAAGAGTCAGTTACCGTTCACCTTTAAGTTAACCCCACGACTGTG
CATTTCTTCTACTGCATTTCAGATGTCTAGGGAGAAGAGGCTAGCATTTG
TTTATTCAAATGTATTCTCTATCTTGTAGTAAAATTATGAGGATATGTTT
TAATCTATGAATATAAAGTAGGAATGATGATTATAAAAATAACTAACACT
TAAATATCATTTAAGTAAACTTTAGAAGTAATGTTCATTCAAGTGCCCTC
ATAGGATGAAATTTTATGTCTTGAGATAAGACTATAACAGAAATGTACAA
TATTATAATTCAAGAGCATGAATACATTCCAGTCATTTGTAAGACACAGT
GAATATAGTTAATGATATATTATTTTTGCCAAAATGAAACTGAATTTTGA
TTATAATTATCATAAATAAATGATTCATTTTGCAGTGAAGGATGCAATAA
TTATTCTAGGAGGTCCCTACCCCATGTTATTCATTCACCAAAACACCATG
ACGTATATCATACTTATATATAAATGTTACATTTATAAATAAAATTACAG
TAAAAGTATATCTTCATATAGTTGGTGTGAAGACCTCATATACTTATGAG
AAAATTCTATATTGAGACTGAATACATGGTCTGCGTTTGTACATGTGTTG
TATTCATGAGTTTATTTCTATGTCGATTTTATAATGGAAGTTTAATATTT
AGCTTAAATCTGAAATTAACTATCATGATATAGTTCTTGGATGTCACATT
TATAAAACGAGAGGTATTTAATGTTATTATATTTTTATACTTTTTGAAAT
CTTTTTAATTTATTCTTTGTTCTTTTTCTCTTCTCCTATTTTTTCTTAAT
TCCTTAATATTCTATTCTCTTCTTTTTTTCTTATTTCTTCTTTTAAAATA
CTTTTTATTTTTTTCCCTTCTATTTTTTTTTTTTTCTTATTCTCTTCCTT
TTATTTTTTCTTCTCTTTTTTTTTATTTTTCTCTTTTCTTTGTCTTTTTT
TTATTATAATTCTTCTTTTTCTCCTTTCTTATTTTCTTTCTTTATACTCA
TCACTCTCTTCTTTTCTTATTACTTCTTTTTTTTTTTTCTTCTTTTATTT
TTTTGTTTTTTTTATATTTCTTTTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_i18.g1 MSMg01no146_i18.g1 CHROMAT_FILE:
MSMg01no146_i18.g1 PHD_FILE: MSMg01no146_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:27 2005
         (649 letters)



>mm_chr8_103282779_103283827
          Length = 1049

 Score = 1185 bits (613), Expect = 0.0
 Identities = 640/649 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtgcatttcttctactgcatttcagatgtctagggagaagaggctagcatttgttta 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtgcatttcttctactgcattccagatgtctagggagaagaggctagcatttgttta 260

                                                                       
Query: 61  ttcaaatgtattctctatcttgtagtaaaattatgaggatatgttttaatctatgaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaatgtattctctatcttgtagtaaaattatgaggatatgttttaatctatgaatat 320

                                                                       
Query: 121 aaagtaggaatgatgattataaaaataactaacacttaaatatcatttaagtaaacttta 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagtaggaatgatgattataaaaataactaacacttaaatatcatttaagtaaacttta 380

                                                                       
Query: 181 gaagtaatgttcattcaagtgccctcataggatgaaattttatgtcttgagataagacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagtaatgttcattcaagtgccctcataggatgaaattttatgtcttgagataagacta 440

                                                                       
Query: 241 taacagaaatgtacaatattataattcaagagcatgaatacattccagtcatttgtaaga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 taacagaaatgtacaatattataattcaagagcatgaatacattccagtcatttataaga 500

                                                                       
Query: 301 cacagtgaatatagttaatgatatattatttttgccaaaatgaaactgaattttgattat 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaatgaatatagttaatgatatattatttttgccaaaatgaaactgaattttgattat 560

                                                                       
Query: 361 aattatcataaataaatgattcattttgcagtgaaggatgcaataattattctaggaggt 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 aattatcataaataaatgattcattttgcagtgaaggatacaataattattctaggaggt 620

                                                                       
Query: 421 ccctaccccatgttattcattcaccaaaacaccatgacgtatatcatacttatatataaa 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 ccctaccccatgttattcattcaccaaaacaccatgacgtatatcgtacttatatataaa 680

                                                                       
Query: 481 tgttacatttataaataaaattacagtaaaagtatatcttcatatagttggtgtgaagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgttacatttataaataaaattacagtaaaagtatatcttcatatagttggtgtgaagac 740

                                                                       
Query: 541 ctcatatacttatgagaaaattctatattgagactgaatacatggtctgcgtttgtacat 600
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 ctcatatacttatgagaaaattctatattgagactgaatacatggtctgcatttgtacat 800

                                                            
Query: 601 gtgttgtattcatgagtttatttctatgtcgattttataatggaagttt 649
           || |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 801 gttttgtattcatgagtttatttctatgtcgattttagaatggaagttt 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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