BAC Information

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BAC

Clone NameMSMg01-146L07
Chromosome8 (Build37)
Map Location 120,682,238 - 120,682,873
singlet/doubletsinglet
Overlap genenone
Upstream geneGan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146L07.T7 (MSMg01no146_l07.b1)MSMg01-146L07.TJ (MSMg01no146_l07.g1)
ACCAG350170AG350171
length1,2411,248
length of high quality
(start - end)		603 (124 - 726)636 (91 - 726)
definitionCHROMAT_FILE: MSMg01no146_l07.b1 PHD_FILE: MSMg01no146_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:48 2005CHROMAT_FILE: MSMg01no146_l07.g1 PHD_FILE: MSMg01no146_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTTCTTTTNNNNGCATTTGGCGCTATAGACTACTAAGGGAGAGGATC
CGCGGAATTCCAGGTCATGCACAAGCCCTTAAATTGTTCTGCCCTTGGAG
TGTTGGTTTTCTGAGCCTTGTTGTTGCTAGCCATCCCCCATAAACTTTCA
AATCATGTATCACCAGTGCCTTGCTCGGCCATTGTACTGGCTAGTTTTGT
GTCAACTTGACACAGCTGGAGTTATTACAGAGAAAGGAGCTTCAGTTGAG
GAAATGCCTCCATGAGATCAAACTGTAAGGCATTTTCTCAATTAGTGACC
AAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTGTGCTGGTAGCTTG
GGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGTGAAGCAAGCCAGTAAA
GAACATTCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTG
AGTTCCAGTCCTGCATCCTTTGGTGATCAACAGCAGTATGGAAATGTAAG
CCGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTGTG
CAGGAATAGAAACCCTGACTAAGACAGCCATCATCAGAGAAGCTTCCTCC
TGCAGCAGACAGGAACAAATGCAGAGACCACAGCCAGACACTACACAGAG
AGTGCGAGAACTTGGAACACTCAGCCCTAAGCAGGATGACTCCACCAAAT
ACCTTAACTCTAGGATCCGGAGGCAGAGAGAGTGGAAGAGCCAGAGAGAA
TGGAAGACTCCTAGGAAACAAGGCCCTCTAAATGAACAGGATCACATGAA
CTCTCAGCATCTGATTCAGCGTGCACAGGTATTGCGTGTGTCTGCATCCG
ACTGGTCCTATATTTGATAGAAAAATGTACACTTAGTCCCTAACCCAGTG
TATAATCTACTGCAAATGAAATTTTTGTTTTCTCCAGGTTATTCTCCTGA
AGAAACAAACTATTTTTATTATCTTTTATTTTGTTCTACCCTTCCATATC
CATTGGATTATTTTATCTTATGTTTTTTTTTTTGTCTTCCTCTTGCATAT
TCTTGTTATTTTTTAATAAACTTTTTATACTAGTTTTTTTCATTTTTTCC
TTCTACTCTTTTATCTTTTTTGATAAACATAATCCATCCTCTTTTATTTT
TTCTATTTATTTCAACAACTTTTTACCTTTTACTTCTCTCATTTATTATA
CTCCTATTCAATATTTATAATCATATACTTATCTTTAACCT

NCCGGTTATTTTTNNNAACATGCGTAGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAAGTGTGTCTCTCCTGA
TTTTCGTAGTGCACACTGTCAGGGCAGTGGCATTTGCCCCCGAGCCACTG
TGAATGCTCAGAACAAGAACCGCCAGGAAAAAAAATGTCAAAAGTCCCAA
ACTTGGATCTAATTCACAGTTTGCAAGACTCCAACATGGAATGGCGGCCG
AACAATTCCAACTCCATTAAACTCTCAGCGCTGTTCGGGGCCTGGGCCTG
TGGGTGCCAGAGCCCCAGCTGCCATTTCAGCTTCCTGAACGAAGATGAAT
CGCCGAGGAAAATGGGCTGTAATGAAAACACTGACAGACCCTTCAACGCA
ATGGAGCTCCAGGGCCTCTCGTTGTTACATTTCATAGGCGATGCAATTCC
GGCCTTGGAAACAGCCTTCCTCTCCACTCCGGAGAGGGGCTTCAAGTCCT
TGCCACAGGAGCCACGGTTGTCATAAGATGCCTTCATTTGGGGGATGGAT
TGTATGTCCGATTCTGCTGACCTACACCTATCTCTGAGAATAGTTGCATT
TTTTTTTTCTTACGGGGGAGGTCAGACCAGCCATGTGCACCTGGTATAGA
ATGCCTGAGGTTGGGCAGTCCCCGCAGCTCTCTTCATGCCCCGAGGAATG
ATTTTATAACACTCTCCTATTCCTATGGAGGATCTGTGAGAGATATAGAG
AGTACTTCCCTAACGAACTGGCCTGATTCCTGTTTGTATAGGGAGTGTTC
ATTCCTTTGTACTGTGTCCTATATCTGTTGGTTCTTCTGTGCTTCCTGTT
ATTGTTCTTTAAATCCCTTCCTTTTCTTCTTCTCTTTTGCGCTTCTTATT
CTTCAAATACTTTATTTCTCTCAAAATCTCCTATATCCTTTTTTTTTTCC
TCTTTTTTTCCTTATTCAATCTCCATTCTTTATATTCCTTCCTATACTCT
TAACCTTTCTACTTTTATTCTCTTCTTTTTCTTTATTCTTACCCCTCTCT
ATTTCTACTTTCAATCAATTCTTATTTCACACATCACCTCCATTCCTACC
TCTATCTCTTATCTCACCTTACTCTTTCTTTTTCATTACTTTTCTATTTA
TTCTATTCTTTTCCTTCTTTTTTTAATTTCTCATTATTTTTCATTTCCAC
TTCTCTTTATATCTCCTCTTTCTTTCTTTTTTCTTATATTTACTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_l07.g1 MSMg01no146_l07.g1 CHROMAT_FILE:
MSMg01no146_l07.g1 PHD_FILE: MSMg01no146_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:48 2005
         (636 letters)



>mm_chr8_120682038_120683073
          Length = 1036

 Score = 1199 bits (620), Expect = 0.0
 Identities = 632/640 (98%), Gaps = 8/640 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctcctgattttcgtagtgcacactgtcagggcagtggcatttgccccc----gagcc 56
           |||||||||||||||||||||||||||||||||||||||||||||||        |||||
Sbjct: 201 tctctcctgattttcgtagtgcacactgtcagggcagtggcatttgc----aggggagcc 256

                                                                       
Query: 57  actgtgaatgctcagaacaagaaccgccaggaaaaaaaatgtcaaaagtcccaaacttgg 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 actgtgaatgctcagaacaagaaccgccaggaaaaaaaatgtcaaaagtcccaaacttgg 316

                                                                       
Query: 117 atctaattcacagtttgcaagactccaacatggaatggcggccgaacaattccaactcca 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atctaattcacagtttgcaagactccaacatggaatggcggccgaacaattccaactcca 376

                                                                       
Query: 177 ttaaactctcagcgctgttcggggcctgggcctgtgggtgccagagccccagctgccatt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttaaactctcagcgctgttcggggcctgggcctgtgggtgccagagccccagctgccatt 436

                                                                       
Query: 237 tcagcttcctgaacgaagatgaatcgccgaggaaaatgggctgtaatgaaaacactgaca 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tcagcttcctgaacgaagatgaatcgccgaggaaaatgggctgtaatgaaaacactgaca 496

                                                                       
Query: 297 gacccttcaacgcaatggagctccagggcctctcgttgttacatttcataggcgatgcaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gacccttcaacgcaatggagctccagggcctctcgttgttacatttcataggcgatgcaa 556

                                                                       
Query: 357 ttccggccttggaaacagccttcctctccactccggagaggggcttcaagtccttgccac 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttccggccttggaaacagccttcctctccactccggagaggggcttcaagtccttgccac 616

                                                                       
Query: 417 aggagccacggttgtcataagatgccttcatttgggggatggattgtatgtccgattctg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aggagccacggttgtcataagatgccttcatttgggggatggattgtatgtccgattctg 676

                                                                       
Query: 477 ctgacctacacctatctctgagaatagttgcattttttttttcttacgggggaggtcaga 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctgacctacacctatctctgagaatagttgcattttttttttcttacgggggaggtcaga 736

                                                                       
Query: 537 ccagccatgtgcacctggtatagaatgcctgaggttgggcagtccccgcagctctcttca 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ccagccatgtgcacctggtatagaatgcctgaggttgggcagtccccgcagctctcttca 796

                                                   
Query: 597 tgccccgaggaatgattttataacactctcctattcctat 636
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tgccccgaggaatgattttataacactctcctattcctat 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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