Query= MSMg01no146_n15.b1 MSMg01no146_n15.b1 CHROMAT_FILE:
MSMg01no146_n15.b1 PHD_FILE: MSMg01no146_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:07 2005
(408 letters)
>mm_chr8_127659908_127660716
Length = 809
Score = 615 bits (318), Expect = e-180
Identities = 388/426 (91%), Gaps = 27/426 (6%)
Strand = Plus / Minus
Query: 1 cgctcactctggcccaaagatatacccaggctttgaaaatcctgagccccc------ttt 54
|||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 547 cgctcactctggcccaaagatatacccagg-tttgaaaatcctgag----catgtttttt 493
Query: 55 ttttttcttgttaagatgtgggaaaagtataaacttctcttttaatcattagctttccta 114
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 492 ttttttcttgttaagatgtgggaaaattataaacttctcttttaatcattagctttccta 433
Query: 115 atcttctgttcactatctggaaaacggacaggaaaatatatgcaacccacgaagtgtagg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atcttctgttcactatctggaaaacggacaggaaaatatatgcaacccacgaagtgtagg 373
Query: 175 caccaggcatatggtgattgcttagccactgacaaccagcattccaaggtcgctcattca 234
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 372 caccaggcatatggtgattgcttagcctctgacaaccagcagtccaaggtcgctcattca 313
Query: 235 ttccattcactccagtgtctatgaaaacactgggtaagttgtcctttgtttgggagattt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttccattcactccagtgtctatgaaaacactgggtaagttgtcctttgtttgggagattt 253
Query: 295 ttgtttgtttgtgcacatgtgcatttttgtacatatatacacacatgccatatagagaga 354
|||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||
Sbjct: 252 ttgtttgtttgtgcacatgttcatacgtgtacatatatacacacatgccataaagagaga 193
Query: 355 cagacagaca--------------gagagagagagagagag--agagagagagagagaga 398
|||||||||| |||||| |||||||||| |||| ||||| ||||||
Sbjct: 192 cagacagacacacacacacacacagagagaaagagagagaggaagagggagagggagaga 133
Query: 399 gagaga 404
||||||
Sbjct: 132 gagaga 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space: 319200
Effective search space used: 319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_n15.g1 MSMg01no146_n15.g1 CHROMAT_FILE:
MSMg01no146_n15.g1 PHD_FILE: MSMg01no146_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:07 2005
(513 letters)
>mm_chr8_127590458_127591370
Length = 913
Score = 899 bits (465), Expect = 0.0
Identities = 501/517 (96%), Gaps = 8/517 (1%)
Strand = Plus / Plus
Query: 1 tagtggtattatctcagcgttgcagcaaatccctggcacaggaggc----gccccgctag 56
||||||||||||||||| ||||||||||||| ||||||||||||| | | |||
Sbjct: 201 tagtggtattatctcagtgttgcagcaaatcactggcacaggaggtaatgg----ggtag 256
Query: 57 gctgatcacacaaaccaagggcttcgagtgcagcttgcactggccttgtggagatcccag 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gctgatcacacaaaccaagggcttcgagtgcagcttgcactggccttgtggagatcccag 316
Query: 117 aaccggcagagctttgggcttcttgcttgattttgtttggaccttgtgtagccgccatct 176
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 317 aaccggcagagctttgggcttcttgcttgattttgtctggaccttgtgtagccgccatct 376
Query: 177 ctgtgcaatggcatctgtgtaaggccctctcctaggatactgtgtttggtttctccatgt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctgtgcaatggcatctgtgtaaggccctctcctaggatactgtgtttggtttctccatgt 436
Query: 237 gactgacaagcaggcttcccctggcagaacattcttgcatgtacaacttcatacctacag 296
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gactgacaagcaggcatccactggcagaacattcttgcatgtacaacttcatacctacag 496
Query: 297 agggcgccctgaccccaaagaataccttttttgggcttttacgctacaggatgggaagtg 356
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 497 agggcgccctgaccccaaagaagaccttttttgggcttttacgctacaggatgggaagtg 556
Query: 357 agtatgttttgaaggtacttaataaaaccattactaaacgctcgcagaccaaccctggga 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agtatgttttgaaggtacttaataaaaccattactaaacgctcgcagaccaaccctggga 616
Query: 417 ctggggcacgctgcctttgccttcctgcagaaccctgcaggctctgggtaaagttttgga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctggggcacgctgcctttgccttcctgcagaaccctgcaggctctgggtaaagttttgga 676
Query: 477 actgttgcttgtgaactgttaccacttctgtgacact 513
|||||||||||||||||||||||||||||||||||||
Sbjct: 677 actgttgcttgtgaactgttaccacttctgtgacact 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
