Query= MSMg01no147_a08.b1 MSMg01no147_a08.b1 CHROMAT_FILE:
MSMg01no147_a08.b1 PHD_FILE: MSMg01no147_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:29 2005
(661 letters)
>mm_chr8_115184287_115185347
Length = 1061
Score = 683 bits (353), Expect = 0.0
Identities = 375/383 (97%), Gaps = 2/383 (0%)
Strand = Plus / Minus
Query: 5 gaattcaattttttaaagcagatgaagtacctattgatttccctacgttcagaaattgtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaattcaattttttaaagcagatgaagtacctattgatttccctacgttcagaaattgtg 324
Query: 65 acggtatatgctggctgtaactttctgagtggcaaaaccgttgttattgttattgactcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acggtatatgctggctgtaactttctgagtggcaaaaccgttgttattgttattgactcc 264
Query: 125 aagcaaagagttgtcgtcacgataaaagctgagctttaaagatgtttactgaccttgcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagcaaagagttgtcgtcacgataaaagctgagctttaaagatgtttactgaccttgcaa 204
Query: 185 atctaagggtatgaacataaatatgtagaaggtagctcgctctcgatcttgctcttcttt 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 203 atctaagggtatgaacataaatatgtagaaggtagctcgctctcaatcttgctcttcttt 144
Query: 245 ttacggtgggtagtggttaaaacgagccctcataactatccaaatgctgagattgagtta 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 143 ttacggtgggtagtggttaaaatgagccctcataactatccaaatgctgagattgagtta 84
Query: 305 --ctgagtcctcagctgtagatgggacacctatatgaacccccaactacaatgctcagaa 362
|||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct: 83 ctctgagtcctcagctgtagatgggacatctatatgaacccgaaactgcaatgctcagaa 24
Query: 363 aactctatggaagatggggtaaa 385
|||||||||||||||||||||||
Sbjct: 23 aactctatggaagatggggtaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_a08.g1 MSMg01no147_a08.g1 CHROMAT_FILE:
MSMg01no147_a08.g1 PHD_FILE: MSMg01no147_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:29 2005
(628 letters)
>mm_chr8_115039872_115040899
Length = 1028
Score = 1185 bits (613), Expect = 0.0
Identities = 624/628 (99%)
Strand = Plus / Plus
Query: 1 accggagtgcatttcagccccatgctgacttaaagcaagtacaatttaatggaaacatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accggagtgcatttcagccccatgctgacttaaagcaagtacaatttaatggaaacatca 260
Query: 61 atgacaaaatatttccgtggtcaaggtgaagatgtataaattattaaaattctccaaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgacaaaatatttccgtggtcaaggtgaagatgtataaattattaaaattctccaaggt 320
Query: 121 tgggaaggaatagaaaaacccaatttcaaagagttttgggtaaatatgtttgaaacagtt 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggaaggaatagcaaaacccaatttcaaagagttttgggtaaatatgtttgaaacagtt 380
Query: 181 gccgcttgaggggcacgcagggcagctggctttgttcccttggtgagcatccggagaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccgcttgaggggcacgcagggcagctggctttgttcccttggtgagcatccggagaacc 440
Query: 241 actgtctcccccagggagtggaacgcatcatcttagccttgcacatctccttggtctcat 300
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 441 actgtctcccccagggagtggaacacatcatcttggccttgcacatctccttggtctcat 500
Query: 301 catctaggtgcactgaactagctgcagctgagtgagaatgtataaagaatgagagaagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catctaggtgcactgaactagctgcagctgagtgagaatgtataaagaatgagagaagat 560
Query: 361 tttctagtctactttgccggtaggcaccagtccaatctactctttcacaactggcctgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctagtctactttgccggtaggcaccagtccaatctactctttcacaactggcctgct 620
Query: 421 ctggggccctgggtcttcagcagcctgcacatctcatgggaccatttggatctcactggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggggccctgggtcttcagcagcctgcacatctcatgggaccatttggatctcactggt 680
Query: 481 ttggcagtgtgagggaccccgtgcagagaaatttgctccatgcaaactcacttggttttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggcagtgtgagggaccccgtgcagagaaatttgctccatgcaaactcacttggttttc 740
Query: 541 ccctagtttcaaaaatagcatcaggccagcaccggccacaacagtttaatgatgctaaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccctagtttcaaaaatagcatcaggccagcaccggccacaacagtttaatgatgctaaag 800
Query: 601 gctgcatgtctaanaaaaaagaaccaaa 628
||||||||||||| ||||||||||||||
Sbjct: 801 gctgcatgtctaaaaaaaaagaaccaaa 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
