Query= MSMg01no148_m19.b1 MSMg01no148_m19.b1 CHROMAT_FILE:
MSMg01no148_m19.b1 PHD_FILE: MSMg01no148_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:49 2005
(608 letters)
>mm_chr8_89265739_89266746
Length = 1008
Score = 1122 bits (580), Expect = 0.0
Identities = 601/608 (98%)
Strand = Plus / Plus
Query: 1 cagaccctgtctcacaaccaaacaaaaaacacaaaaaaacttgtgaattttacactaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaccctgtctcacaaccaaacaaaaaacacaaaaaaacttgtgaattttacactaaat 260
Query: 61 acaaaactttttcaaccaaagtgtaagttccaaaaatatatttatagtacataaaataac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaaactttttcaaccaaagtgtaagttccaaaaatatatttatagtacataaaataac 320
Query: 121 ttgcaattttacctcttcattagactgtaactgataacatttaaaagtattttactgcat 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtaattttacctcttcattagactgtaactgataacatttaaaagtattttactgcat 380
Query: 181 ttttgattatttattctatgtgtacattgtgttttaatgcagaagtaggcagtatgtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgattatttattctatgtgtacattgtgttttaatgcagaagtaggcagtatgtctg 440
Query: 241 ctctcgaggatcttaggtgtgtgtactcttcaatgtctgttgatcctggaagcacactgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctcgaggatcttaggtgtgtgtactcttcaatgtctgttgatcctggaagcacactgt 500
Query: 301 ccaccgaaacggaagcaacagaggggccaggtcaggcaactgacacacgacagagccaaa 360
||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 501 ccaccgaaaaggaagcaacagaggggccaggtcaggcaactgacagatgacagagccaaa 560
Query: 361 agacatatccaggtctgtctcttaatggcctatcctttcaataacacaattataatggca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacatatccaggtctgtctcttaatggcctatcctttcaataacacaattataatggca 620
Query: 421 cttcaagagtaggccctgggaggttcaaagagtaatatacttaacagctgttcacatggc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcaagagtaggccctgggaggttcaaagagtaatatacttaacagctgttcacatggt 680
Query: 481 actggaaactaaagctcagagaaactaatcccaaagtagcaaaaatacacaaccacaaag 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 actggaaactaaagctcagagaaactaatcccaaagtagcaaaaacacacaaccacaaag 740
Query: 541 taccacaaaaatgtacagtgctcaaggaacaaaataatctagtttgaataggtagggtaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 741 taccacaaaaatgtacagtgctcaaggaacaaaataatctagtttgaataggtagggcaa 800
Query: 601 aagtgaaa 608
||||||||
Sbjct: 801 aagtgaaa 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_m19.g1 MSMg01no148_m19.g1 CHROMAT_FILE:
MSMg01no148_m19.g1 PHD_FILE: MSMg01no148_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:49 2005
(565 letters)
>mm_chr8_89369349_89370313
Length = 965
Score = 1023 bits (529), Expect = 0.0
Identities = 556/569 (97%), Gaps = 8/569 (1%)
Strand = Plus / Minus
Query: 1 ttctcgggtgaccttgttaaccacagcttctttcatgctaactagtggcagatcttttct 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ttctcgggcgaccttgttaaccacagcttctttcatgctaactagtggcagatcttttct 706
Query: 61 ctgctttaaaaccaaaataacctgtatttctgtggatcctctagcagatttttgcataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctgctttaaaaccaaaataacctgtatttctgtggatcctctagcagatttttgcataga 646
Query: 121 gttgggctgggtgcctaaaaggagaaggcacacactctcccagcttgcaaggctgctagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gttgggctgggtgcctaaaaggagaaggcacacactctcccagcttgcaaggctgctagt 586
Query: 181 ctgtcgtttgtgcctttgggggaccatctagtggaacttgatggtgcacggacgtgggtt 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ctgttgtttgtgcctttgggggaccatctagtggaacttgatggtgcacggacgtgggtt 526
Query: 241 gattttcatataaggagaaatagtggatagtctatcatggagaccatcatatgttcagtt 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gattttcatagaaggagaaatagtggatagtctatcatggagaccatcatatgttcagtt 466
Query: 301 tcctaatgtgatcatttctccctgagcctttgggttttatcaca----ccccacgtgtta 356
|||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 465 tcctaatgtgatcatttctccctgagcctttgggttttatcacagttg----aggtgtta 410
Query: 357 agcccagacagggtcatcggcccacactgaggagataacagcctgccgtgctctcactcc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agcccagacagggtcatcggcccacactgaggagataacagcctgccgtgctctcactcc 350
Query: 417 cttcccctctactccatgtcttatattggaaatcctcattgcattttagacctcacgtcc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cttcccctctactccatgtcttatattggaaatcctcattgcattttagacctcacgtcc 290
Query: 477 tgtgtttaaggctctgtgtgggccccatactgagccaaggcccaggtcaagctagaggtg 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 289 tgtgtttaaggctctgtgtgggccccatactgagccaaggcccaggtcaagctagaggcg 230
Query: 537 cattcttggctgcctcttcactcctgcag 565
|||||||||||||||||||||||||||||
Sbjct: 229 cattcttggctgcctcttcactcctgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
