BAC Information

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BAC

Clone NameMSMg01-149B05
Chromosome8 (Build37)
Map Location 71,970,722 - 71,971,314
singlet/doubletsinglet
Overlap geneLOC670593
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561
Downstream geneEG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149B05.T7 (MSMg01no149_b05.b1)MSMg01-149B05.TJ (MSMg01no149_b05.g1)
ACCAG351897AG351898
length697688
length of high quality
(start - end)		589 (45 - 633)525 (71 - 595)
definitionCHROMAT_FILE: MSMg01no149_b05.b1 PHD_FILE: MSMg01no149_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:12 2005CHROMAT_FILE: MSMg01no149_b05.g1 PHD_FILE: MSMg01no149_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:12 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCACTTTTCACCCATTGACTATGATTGCTGACTGCTCTCCTCCCAC
CTTTTCTCAAGAGAAAATATGAGGAATACTTAGCTCTTAATTAAAACACA
AACAAAGGTGCACGCGCACGCAAACACACAAACACACACACACACACACT
AAAAAGAATTAAAGACAAGATCGGGCATGCTCAGGGTGGTTTGGCTGTAG
ACACTTATGGAAGTCTAAAAGGAAGGATTCCAGGCCTGAAGGAGATAGGA
ACTCCAGAGAATGACCAACCACCAGAATCAAATAACATGAACCCTCAGGG
CACTCAGAGATGGAACAATGAAACAAAGAACAAACATGGGTTGGACGGAT
ATCTCCGAGCACCTATGTAGCAGAGGGGCAGCTAGGTCTTCACATGGGTC
CCAATCAACTGGAATGGGGGTATCAAAAAAAGCTGTTCATCCTAACTCAG
TTTTATTCTTCTAGCTGAGCTACTTTTTCTGTCCTCAGAGAGAGACGAAG
TGCCAGGGTTTGGACATACAGGGAGTCCCAAACTGCTCAGAGGTGAAGTG
GAGGAGGGGCAGGGAGAGACTGTGGGACTGGGTGACCAGGAGGGGGTCAC
TGAGCTAGATGCAAACATAAGAAAAAATTAAATTTAATTTTTACAGA

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAATTAACATCCTTGCCTGTGGGCTTCTTG
TACACACCAGAAAAAGTCCAACCTTGTGCTCCTAATTGTTCTGCTGTGCT
TTGTCTAAATGAACTTTTATGAGCTGGCTGCCATCCAGTTTCACACAGAT
CCTCTACCCACAATTTCACTTGGGAAGACCAAGTCTGCTGTCATGCACTA
CTGTCAGGGTGTGGTTTCTGGGGCGCTTCTGCTTATTTTTCGTATGGATT
TTCCAGGTTGGCTTGGGCAGAATCCTCCTCTGAGCAATGAACACAACTTG
CTTCCCACTGAATTTTTTCTCCAATTCACGAACTAGCCTGACATGAATTT
TCTGGAAAGACTTAAAGCTGAGGAACTGGTACAAAAATTATGGTAGCTTT
CCGACCACCACCAACTTCAATTTCCTTGGTTGTGGTGATGTTGACTTCCT
GCAGCAGAGCCTTGACATCTGCGTTCATCTCCAACTCGAGCAGCACCTGA
GAGATGCCAGACTTGGAACTCATCCGGCTTCTCCCCATTTGGCTTCACAG
TCTTGGCACTGGAGCTGAACATGGCTTCATCCTTACGGAGTGCCAACTTA
TAAAGAGGGACAGCTGTGGAGAGAACTGCCACAAGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_b05.b1 MSMg01no149_b05.b1 CHROMAT_FILE:
MSMg01no149_b05.b1 PHD_FILE: MSMg01no149_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:12 2005
         (589 letters)



>mm_chr8_71970516_71971504
          Length = 989

 Score = 1007 bits (521), Expect = 0.0
 Identities = 571/593 (96%), Gaps = 10/593 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcacttttcacccattgactatgattgctgactgctctcctcccaccttttctcaa 66
           |||||||||||||| | ||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 207 gaattcacttttcagcaattgactatgattgctgactgctcagctcccaccttttctcaa 266

                                                                       
Query: 67  gagaaaatatgaggaatacttagctcttaattaaaacacaaacaaaggtgcacgcgcacg 126
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct: 267 gaggaaatatgaggaatacttagctcttaattaaaacacaaacaaaagtgcacacacacg 326

                                                                       
Query: 127 caa------acacacaaac----acacacacacacacactaaaaagaattaaagacaaga 176
           |||      ||||||||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 327 caaacacacacacacaaacacaaacacacacacacacactaaaaagaattaaagacaaga 386

                                                                       
Query: 177 tcgggcatgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggattc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcgggcatgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggattc 446

                                                                       
Query: 237 caggcctgaaggagataggaactccagagaatgaccaaccaccagaatcaaataacatga 296
           ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 447 caggcctgaaggagataggaactccagaggatgaccaactaccagaatcaaataacatga 506

                                                                       
Query: 297 accctcagggcactcagagatggaacaatgaaacaaagaacaaacatgggttggacggat 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 accctcagggcactcagagatggaacaatgaaacaaagaacaaacatgggttggacggat 566

                                                                       
Query: 357 atctccgagcacctatgtagcagaggggcagctaggtcttcacatgggtcccaatcaact 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atctccgagcacctatgtagcagaggggcagctaggtcttcacatgggtcccaatcaact 626

                                                                       
Query: 417 ggaatgggggtatcaaaaaaagctgttcatcctaactcagttttattcttctagctgagc 476
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 627 ggaatgggggtatcaaaaaaagctgttcatcctacctcagttttattcttctagctgagc 686

                                                                       
Query: 477 tactttttctgtcctcagagagagacgaagtgccagggtttggacatacagggagtccca 536
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 687 tactttttctgtcctcagagagagacgaagtgccagggtttggacatacatggagtccca 746

                                                                
Query: 537 aactgctcagaggtgaagtggaggaggggcagggagagactgtgggactgggt 589
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aactgctcagaggtgaagtggaggaggggcagggagagactgtgggactgggt 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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