BAC Information

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BAC

Clone NameMSMg01-150D14
Chromosome8 (Build37)
Map Location 53,970,745 - 53,971,089
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150D14.T7 (MSMg01no150_d14.b1)MSMg01-150D14.TJ (MSMg01no150_d14.g1)
ACCAG352721AG352722
length741742
length of high quality
(start - end)
---349 (72 - 420)
definitionCHROMAT_FILE: MSMg01no150_d14.b1 PHD_FILE: MSMg01no150_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:43 2005CHROMAT_FILE: MSMg01no150_d14.g1 PHD_FILE: MSMg01no150_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCAAAGTAGC
CTAACATTGATTACTCCATTGAACCAAGTTCGTGTCCGCAGTTGGATCAC
TTCTCACCACGGTTATCTGTATGTATTCTGTGTCGCGCTGA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTATATTTGATAGCCATATTTTGCACCAA
TAAACGCAATATAAATATTTAAGTAATAATCAGCCCGAGACTGTTAATAT
CTTCGGAAAGAAAAATGAAGCTTGAGTTTCGTATCTCTTTGAATTTTGAA
AAGAGAAAATCCATTAGAATTATTGAATATTTCAAAAGAGAGTGGGAGAG
GTTTCGTTGGATATTTCAGCAGTTATTTTTCTTTGTACAGTATCTGTACT
TTGAGTTGCTGCACATATCTGGAATATTAAGAAAACACTAGAGTTAATGT
GATTTAGTGAGGAATCTTTCCTGGAAGGGACAGCTACTCACTCTCCTTCT
CAGTTCAGGAATGGGTTGCACAAGGCTTATCTGTAATTCTGTGCAGTGGA
AGCAGCAACAGCTGGTTCTCCTCCCTCTGATGGAGACTTCCCCATTCCCT
CTCCCTTCCCGGCTGATGAGAGTGCTTATTATTTATGATCATTATACTAC
GCTCGTCCTTCTTTTTTTGGGCAGGTATACAAAAACAAGGCGGCACATCA
ATCTTCCATTCCCTTCGTTTCCAGTCAACACGTTCACACCTCGCTTCGTT
CTCATATCTATTTATGCCCAGTCCGAATCCCCAGATTGGCTCTATGTTTG
ATGGCACAACTTGTTATGCCCAAATTTGCGAGCACATAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_d14.g1 MSMg01no150_d14.g1 CHROMAT_FILE:
MSMg01no150_d14.g1 PHD_FILE: MSMg01no150_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:43 2005
         (349 letters)



>mm_chr8_53970545_53971291
          Length = 747

 Score =  617 bits (319), Expect = 0.0
 Identities = 340/347 (97%), Gaps = 2/347 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatatttgatagccatattttgcaccaataaacgcaatataaatatttaagtaataatc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 545 ttatatttgatagccatattttgcaccaataaatgcaatataaatatttaagtaataatc 486

                                                                       
Query: 61  agcccgagactgttaatatcttcggaaagaaaaatgaagcttgagtttcgtatctctttg 120
           |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 485 agcccgagactgttaatatctt-ggaaagaaaaatgaagcttgagtttcgcatctctttg 427

                                                                       
Query: 121 aattttgaaaagagaaaatccattagaattattgaatatttcaaaagagagtgggagagg 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cattttgaaaagagaaaatccattagaattattgaatatttcaaaagagagtgggagagg 367

                                                                       
Query: 181 tttcgttggatatttcagcagttatttttctttgtacagtatctgtactttgagttgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tttcgttggatatttcagcagttatttttctttgtacagtatctgtactttgagttgctg 307

                                                                       
Query: 241 cacatatctggaatattaagaaaacactagagttaatgtgatttagtgaggaatctttcc 300
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cacatatctggaa-aaaaagaaaacactagagttaatgtgatttagtgaggaatctttcc 248

                                                          
Query: 301 tggaagggacagctactcactctccttctcagttcaggaatgggttg 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tggaagggacagctactcactctccttctcagttcaggaatgggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 747
Length adjustment: 9
Effective length of query: 340
Effective length of database: 738
Effective search space:   250920
Effective search space used:   250920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)