BAC Information

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BAC

Clone NameMSMg01-151D17
Chromosome8 (Build37)
Map Location 95,125,979 - 95,234,925
singlet/doubletdoublet
Overlap geneIrx6
Upstream geneAJ237917, LOC100041254, LOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
Downstream geneLOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151D17.T7 (MSMg01no151_d17.b1)MSMg01-151D17.TJ (MSMg01no151_d17.g1)
ACCAG353454AG353455
length733729
length of high quality
(start - end)		373 (44 - 416)303 (418 - 720)
definitionCHROMAT_FILE: MSMg01no151_d17.b1 PHD_FILE: MSMg01no151_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:59 2005CHROMAT_FILE: MSMg01no151_d17.g1 PHD_FILE: MSMg01no151_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,234,558 - 95,234,925)(95,125,979 - 95,126,281)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTGTATCTCCTGGAGACCCTCTGGAGGCTCTGGCTAGAAACTATCT
TGTGAAGTTGTGGAAATATAAACGTAGGAACACAAGAATTGTGGACAAAA
CAACAACATAACGTTGTATCTTCTGAAGATCAAAGCTTATTATTGATAGA
TTTAAAAAATGTTGAAGTGATCAAAACACTTGACAATGGATTAAAAAAAA
AAAAAAGAAAACACACACATATTGAAGGTTTAGTTCAGTAGTAGAGCACT
AGCCCAGCATGTGAGGAGCCCTGAGTTAAGTTTTCAGCATAGCAAGTAAA
TAAATAAAATTCAAAAAAATTGTTTTGTGTATGGGTTTGATGTTCACATG
TACCTAGGTGATATCACCCCGCACTTCCTTGGTTTCTTTCCACATATTGG
AGGTGAAGAGCTTCATAAGTCAGATTTTTAAAAATCCAGTGAAGTCATTA
AGAATAGACTAGATCAAGTGGGAGAAAGAAAAGTTGAGCTTGAAAACGGA
TCTTTGAAATAGCACAGCCAGACAGAAATTTAAAAGCCAAAAAATAGCAG
AGAAAGTATGTTTAAGCTCCAGATTATCATGAGAAGATCAAATGTCCATA
CCAAATTGGATACACTAGGGGAGAGATATTAGGCTAATAACATAGGAAAT
ATCTTCAAGGATATAACAGATTTCCTTATAGTG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTACGAAAAATTCCTCCTAGCTTGCTAAAGGAACATCAAGACACA
ATATGTTTGAAGGTATCTTACCTGTGGAAAATGCCAGAGTAATGGAAGGA
ATGTCATTCTCAAGAGGTGACAGGTATCGATTGGCTACTCATCTGGGCTA
AGGTGTCATACATATATCTAAAGATTCTGTTTACTTCTGCAGAACAGAGT
TGTAAACAACATGGGCTTACCACTCTAAAGTCATGTACCCAAACTCTACC
CCCATGTACTCTTATCTCCATTCCCACGTTCCTCAAATTCACTATTCAGT
GGCATGGCTATTTTCCCCTGGGTAAGCCTGAGGGTTGGGGGTTCAATATT
TCCTTCACTGCCACACCTTAAGCCTGAGATGTCCCCCTGGTTGTCACAAT
TGAGCCTGAGACGTCTGTTCCCTTTGTTGTTGTGGTTGAACCTGAGATGT
CCTCCTTGTTGTTATGGTTGAGATTGAGACAACCCCCTTGCTGTGATGAC
TGAAACTAAGATGTCCCCATCAGGTTTACCTCGAATAACTGGTGCTGCTC
TTGAGGAGCTGTGGAACCACTGGCCACCAGAAGAATATCAAGAGAAGCAG
AGACTCTGATCATGACATCCTGCACCCAGTTCCAGCCACTCTCTAGGTTT
GCAGAGCTGTCAGGCTACAGACAGTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_d17.b1 MSMg01no151_d17.b1 CHROMAT_FILE:
MSMg01no151_d17.b1 PHD_FILE: MSMg01no151_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:59 2005
         (373 letters)



>mm_chr8_95234496_95235268
          Length = 773

 Score =  704 bits (364), Expect = 0.0
 Identities = 367/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgtatctcctggagaccctctggaggctctggctagaaactatcttgtgaa 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggaattcactgtatctcttggagaccctctggaggctctggctagaaactatcttgtgaa 371

                                                                       
Query: 64  gttgtggaaatataaacgtaggaacacaagaattgtggacaaaacaacaacataacgttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gttgtggaaatataaacgtaggaacacaagaattgtggacaaaacaacaacataacgttg 311

                                                                       
Query: 124 tatcttctgaagatcaaagcttattattgatagatttaaaaaatgttgaagtgatcaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tatcttctgaagatcaaagcttattattgatagatttaaaaaatgttgaagtgatcaaaa 251

                                                                       
Query: 184 cacttgacaatggattaaaaaaaaaaaaaagaaaacacacacatattgaaggtttagttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cacttgacaatggattaaaaaaaaaaaaaagaaaacacacacatattgaaggtttagttc 191

                                                                       
Query: 244 agtagtagagcactagcccagcatgtgaggagccctgagttaagttttcagcatagcaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 agtagtagagcactagcccagcatgtgaggagccctgagttaagttttcagcatagcaag 131

                                                                       
Query: 304 taaataaataaaattcaaaaaaattgttttgtgtatgggtttgatgttcacatgtaccta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 taaataaataaaattcaaaaaaattgttttgtgtatgggtttgatgttcacatgtaccta 71

                   
Query: 364 ggtgatat 371
           ||||||||
Sbjct: 70  ggtgatat 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no151_d17.g1 MSMg01no151_d17.g1 CHROMAT_FILE:
MSMg01no151_d17.g1 PHD_FILE: MSMg01no151_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:59 2005
         (303 letters)



>mm_chr8_95125779_95126481
          Length = 703

 Score =  586 bits (303), Expect = e-172
 Identities = 303/303 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaagcctgagatgtccccctggttgtcacaattgagcctgagacgtctgttccctttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaagcctgagatgtccccctggttgtcacaattgagcctgagacgtctgttccctttgt 260

                                                                       
Query: 61  tgttgtggttgaacctgagatgtcctccttgttgttatggttgagattgagacaaccccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgtggttgaacctgagatgtcctccttgttgttatggttgagattgagacaaccccc 320

                                                                       
Query: 121 ttgctgtgatgactgaaactaagatgtccccatcaggtttacctcgaataactggtgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctgtgatgactgaaactaagatgtccccatcaggtttacctcgaataactggtgctg 380

                                                                       
Query: 181 ctcttgaggagctgtggaaccactggccaccagaagaatatcaagagaagcagagactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttgaggagctgtggaaccactggccaccagaagaatatcaagagaagcagagactct 440

                                                                       
Query: 241 gatcatgacatcctgcacccagttccagccactctctaggtttgcagagctgtcaggcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatcatgacatcctgcacccagttccagccactctctaggtttgcagagctgtcaggcta 500

              
Query: 301 cag 303
           |||
Sbjct: 501 cag 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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