BAC Information

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BAC

Clone NameMSMg01-151P22
Chromosome8 (Build37)
Map Location 51,889,036 - 51,889,404
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
Downstream geneLOC667517
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151P22.T7 (MSMg01no151_p22.b1)MSMg01-151P22.TJ (MSMg01no151_p22.g1)
ACCAG354004AG354005
length761758
length of high quality
(start - end)		384 (42 - 425)291 (70 - 360)
definitionCHROMAT_FILE: MSMg01no151_p22.b1 PHD_FILE: MSMg01no151_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:57 2005CHROMAT_FILE: MSMg01no151_p22.g1 PHD_FILE: MSMg01no151_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAAAGCTTTCTCCATTTGCAAAAGTTGACAGTATTTGAACAATTCATAG
TGTTTATTATTCTCTTATATAAGGAATGACCGGTTTGGAAAACTGGTTTT
CAATCTTTAAATAGGATGTTTAATCACCTGCAGTGGTATAGGTTTTATGA
GAGTAAAAATATGGTTAGTGACACCTTTTAGCTTCCAGGAGGCTTCTATT
ATGTCAGAAGAGAGAGCATCATATTCCTACATTAAAAGCTTCTGTCACTA
CCACAGAATTATCTCTGAACTTTTCTCTTTCTAAATGATGTTCTTTCATA
GATGTTTTGTTTGTTCGCTTGCTTGCTTTTTTATTTCATTTTGGTTTCGG
TGGGTGGGTGGATGCCCCCCCCCCCNNNNNNNNTNNNNNTNTNTTTTTNN
TNNCTTTTTTTCCTCTTTTTTCCCCTTTTCTTCCCCCTCCTCCCTTTTCC
TCTCCTCTTTTTCCTCTTTTTTCCCTTCTTCTTTCCTTCTTCTTTCCCCC
CCTTTTTCCTTCCCTCTTTTTCCTTTTCTTTTTCCCTTTTTCTCCCTTCC
CCCTCTCCCTCTTTTTTCTCCTTCCCTCCTCCTTTCTTCTTCTCCTCTCC
CCCTTTCCTCTCATTCTCTTTTTTCCCCTTTTTTTTTCCTCCTTTTTTTT
TTTTTCTTCTCTCTCCCCTTTCCCTCTCCTCTCTTTTTCTCCTATCTCTC
TTTTTTTTTTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATGAAGATTTATATGTTTGAATTCTTTTAA
AAAATATTTGTTGACTAAAGGAGATAAAGGGCATAGAAACCTCATAGGAA
GAACAACAATATCAACTAACTTTACCTCTCAGAGCTTCCAGGGACTAAAC
CACCAACCAAAGAGTATACATGGGTGAGTCCATGGCTTTTGCTACATATG
TAGCAGAGGATTGCCTTATCTTACATCAATGGGAGGGGAGGGGCTTCATC
CTGGGAGGCTTTTTGCCCCAGCAAAGGGGATGCTAGAGGGGTGAGTGGGT
GGGTGAGTGNATNNNNTNNNTNTNNNTTTTTNTTTTTTTTTTTTTTTTTT
TTTTTTTTTCCCCCCCCCCCCNNNNNNNNNNNNTTTTTTTTTTTTTTTNT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTT
TTTTTTTTTTTTTTTNTTTTNTTCCCCCCCCCCCCTCCCTTTTTCCCCCC
CTTCTTCCTTGCGTTGTCTCTTTCCCCGGTCTCTCTTTTCGGTTTGTCTC
CCTCCTCCCTCCTTTTTCCTGCCCGCTTTCCCCCCCTTTCTTCCCTTTTT
TCTCTTCCCCCCGTTTTTCCTCCCTTTCCTTCTGTTTTCTCTCCGTCCCC
TTTCNCTCTTTTTCCTTTCCTCTTCGCTGCTTTCTTTGTCTCCGCCTTGT
CCTGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_p22.b1 MSMg01no151_p22.b1 CHROMAT_FILE:
MSMg01no151_p22.b1 PHD_FILE: MSMg01no151_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:57 2005
         (384 letters)



>mm_chr8_51888832_51889615
          Length = 784

 Score =  690 bits (357), Expect = 0.0
 Identities = 366/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaagctttctccatttgcaaaagttgacagtatttgaacaattcatagtgttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaattcaaaagctttctccatttgcaaaagttgacagtatttgaacaattcatagtgttt 514

                                                                       
Query: 65  attattctcttatataaggaatgaccggtttggaaaactggttttcaatctttaaatagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 attattctcttatataaggaatgaccggtttggaaaactggttttcaatctttaaatagg 454

                                                                       
Query: 125 atgtttaatcacctgcagtggtataggttttatgagagtaaaaatatggttagtgacacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atgtttaatcacctgcagtggtataggttttatgagagtaaaaatatggttagtgacacc 394

                                                                       
Query: 185 ttttagcttccaggaggcttctattatgtcagaagagagagcatcatattcctacattaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttttagcttccaggaggcttctattatgtcagaagagagagcatcatattcctacattaa 334

                                                                       
Query: 245 aagcttctgtcactaccacagaattatctctgaacttttctctttctaaatgatgttctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aagcttctgtcactaccacagaattatctctgaacttttctctttctaaatgatgttctt 274

                                                                       
Query: 305 tcatagatgttttgtttgttcgcttgcttgcttttttatttcattttggtttcggtgggt 364
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct: 273 tcatagatgttttgtttgtccacttgcttgcttttttatttcattttggtttcagtgggt 214

                    
Query: 365 gggtggatg 373
           |||||||||
Sbjct: 213 gggtggatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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