BAC Information

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BAC

Clone NameMSMg01-152C04
Chromosome8 (Build37)
Map Location 119,618,728 - 119,619,171
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2
Downstream geneBcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152C04.T7 (MSMg01no152_c04.b1)MSMg01-152C04.TJ (MSMg01no152_c04.g1)
ACCAG354104AG354105
length1,023712
length of high quality
(start - end)
---444 (75 - 518)
definitionCHROMAT_FILE: MSMg01no152_c04.b1 PHD_FILE: MSMg01no152_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:09 2005CHROMAT_FILE: MSMg01no152_c04.g1 PHD_FILE: MSMg01no152_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTTTTCCTTATTTATTTATTTATTATACACCCCTCTTCTCCCCCCACT
CAACACAATCTACAACXXXXXXXXXXXXXXXXXXXXXXXXXXCCCACAGA
GGCATCCGCGGAATTCGACCATTCACCCCAATTATACTTTACATCGATCC
TGGTCTCTGAGTACAGCGCACTCCTGCGGGATCCTAAAGCGCTTTTCCCT
CCAGGCCGCCCAACAGCCGCTGTCCTCCCCGCCGCAGTCCCAATTCATTG
TCGGACGGCTCTGCTCACGCTGGCGCGCCGTACCCGCATCCGCCTCATTC
GGTCCGGCTTTCTTAATGTCATCTCCGGTCGCTAAATCCGCCTGCCATGA
CCACGCCCGTTTTCGACTCCGTCACCCCGGTCCACGGCCGCACTCCCCGC
GCACCCCCTGAACTTCGCACTTCCGGTAGACTCGTCGTTTGTGTTTATTT
ATAAGGCACGACCACGGCCTTCCATAACCACTCTACCCCCTCTAACCTTT
CGCCTACTGCCCGTTTCTTTCCCCGCCCCCGCGGCATCTTTACCCTCCTA
AAGACGTCGATCACATAGTTTGATAGTGCTTGTTTATTTCGCGTTCTCTC
TACTTCACTGCATCCACGATTCGCTTCACTCGCCTGCCTTTAATACTCTA
TCCCGCGCGACGCGCCCCGCCCTCCACCTTAACCCCCCTTCACGACCGTC
ACCTATGCTCACCTATATGCGACCCCGGCCCCTGTCCCCCCCTCTCTCTC
ACTCTAACTCTTCCCCTCCTTCTCACCCTTGACGTCACTCCCCACCTCAT
ACCACAATCCTATATCACTCCTCCCCTCTTATTTTTACTAACCCCTCCCC
CACCTTTATCTCTCTCATAATCTCTCGTCTCTCCCTGTGTCCTCTCTATT
TTATCCTCATGCTGATCCCCATTTGTGTCTCCCTCCTCTCACCCAGCCTC
TATTATCTTTTTCTTCCAATCTACCCTCACCTTCCACCTATCATATCACA
TTTGCTTCTATACCTCTTCCCTN
CATGCAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAACTCTGCCCAGAGCACCCGAATGAATTCCAGA
GCTGGGAGGCAGAGACAGGAGGATCCCTGAGGCCTTCTGCATAGCCAGTC
CATCGGGAACCCTTCAGTTCAACTCAGACTGATAAGAGGGAGGACCCAAA
GACTAAAATCCACACTGCATTTTTGAGAGCATAGGGTGGGAATTGGGGGA
TTCTCGGTTCCTGCTGCTCGAAGTGACGCCCTCAGCCAGGAGAGCAGCAG
AAGGCTTCCACACTCCACCACATATACAGGAATCAAAACACCACAGGACA
CCTCGTGAATATGTATGATCTCCCTGTCTTATGTAATTAAAGAAATTATA
AAACTAAAGATGCTTTGGGATTGGAGACAGGGATCAGTCAGTAGAGTATT
CTACTTGCCAAAGAAAGACCCTGAGATCAACTCTCAGGACTCAGGGTTAA
AAAAAAGGGTGGGGGAGCCAAGCCAAGCCTGGCGCTGGTACTGCCTGCTG
TCTGCTGTCTGCTGTCTGCTGTCTGCTGCCTGCTGCCTGCTGCCTGCTGC
CTGCTGCCTGCTGCCCGCTGCCTGCTGCCTGCTGCATGTATACAACCCCA
GTACTCAGGAGGTTGAGGTAGGCAGCTCCTTAGCTGATGGCCAACCAGCT
TACCCCCTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_c04.g1 MSMg01no152_c04.g1 CHROMAT_FILE:
MSMg01no152_c04.g1 PHD_FILE: MSMg01no152_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:09 2005
         (444 letters)



>mm_chr8_119618450_119619293
          Length = 844

 Score =  859 bits (444), Expect = 0.0
 Identities = 444/444 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccagagcacccgaatgaattccagagctgggaggcagagacaggaggatccctgaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cccagagcacccgaatgaattccagagctgggaggcagagacaggaggatccctgaggcc 663

                                                                       
Query: 61  ttctgcatagccagtccatcgggaacccttcagttcaactcagactgataagagggagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ttctgcatagccagtccatcgggaacccttcagttcaactcagactgataagagggagga 603

                                                                       
Query: 121 cccaaagactaaaatccacactgcatttttgagagcatagggtgggaattgggggattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cccaaagactaaaatccacactgcatttttgagagcatagggtgggaattgggggattct 543

                                                                       
Query: 181 cggttcctgctgctcgaagtgacgccctcagccaggagagcagcagaaggcttccacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cggttcctgctgctcgaagtgacgccctcagccaggagagcagcagaaggcttccacact 483

                                                                       
Query: 241 ccaccacatatacaggaatcaaaacaccacaggacacctcgtgaatatgtatgatctccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ccaccacatatacaggaatcaaaacaccacaggacacctcgtgaatatgtatgatctccc 423

                                                                       
Query: 301 tgtcttatgtaattaaagaaattataaaactaaagatgctttgggattggagacagggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgtcttatgtaattaaagaaattataaaactaaagatgctttgggattggagacagggat 363

                                                                       
Query: 361 cagtcagtagagtattctacttgccaaagaaagaccctgagatcaactctcaggactcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cagtcagtagagtattctacttgccaaagaaagaccctgagatcaactctcaggactcag 303

                                   
Query: 421 ggttaaaaaaaagggtgggggagc 444
           ||||||||||||||||||||||||
Sbjct: 302 ggttaaaaaaaagggtgggggagc 279


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)