BAC Information

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BAC

Clone NameMSMg01-152N15
Chromosome8 (Build37)
Map Location 29,380,073 - 29,380,445
singlet/doubletsinglet
Overlap genenone
Upstream geneEif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698, EG666422, LOC666430
Downstream geneEG666446, LOC100042598, Unc5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152N15.T7 (MSMg01no152_n15.b1)MSMg01-152N15.TJ (MSMg01no152_n15.g1)
ACCAG354612AG354613
length760743
length of high quality
(start - end)
314 (47 - 360)355 (76 - 430)
definitionCHROMAT_FILE: MSMg01no152_n15.b1 PHD_FILE: MSMg01no152_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:04 2005CHROMAT_FILE: MSMg01no152_n15.g1 PHD_FILE: MSMg01no152_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGATCTTTTCAGACTTTTATCATGAATGGGTGTTGGATCTGGT
CAAATTCTCTCTTCACATCTAAAGAGATGATCATGTGGTTTTTGTCTTTG
AGTTTGTTTATATAATGGATTACGTTGATGGATTCCAGTATATTAAACCA
TCCCTGCAACCCTGGTATAAACCCTACTTGGTCAGGATGGATGATTGCTT
TAATGTGTTCTTGGATTCGGTTAGCAAGAATTTTATTGAGTATTTTTGCA
TCGATATTGATAAGGGAAATTGTTCTGAAGTTCTCTATCTTTGTTGGATC
TTTCTGTGGTTTAGGTATTGCGTAATTGCGCATTGAGTAATTGTGTCTTC
CTACATTGAGTTGTTTACAGCACCTTCTACTTCTATTTTGCGCAATACCC
TGTCGTTAACCGCTGCTACATCTTCTCTTATTGCCCGATATATCTCTGCC
CTTATCCCATCTCGTCTTGCCCCTTTTTTCTTTGTCCACCCTTTTTTGTT
TCCCCTTTTTTCCCCTCACCTATATTTCTCCTGCTTTCATCCCCTTACCC
TATCTTGTTTTCCCCCCCCTTTTTTTCCCCTCCCTTTTTTTTCCCCCCCT
CTTCTCCCCCCCTTTTCTTTTTTCTTTTTCTTCCCCATTCCCCCTTTCCC
CTTTTTATTTTTCCCCTCTTTTTTTTTTTTTTTCTCCCCGCTCTTTTTCT
CTCCCTTTTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAAGGGACAGCAGATTGTACACAA
AGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTATGCCCAG
GCTGGAAAAGACTTTGCCCTGGACCATGGAGAAGCAGATGCTATGGCAAG
TTATAGAATCAATGCTTCAAAAAGGCTTGAAGGTCAAAGGCAAGGGCAGG
GTCAAGGAGAAAAACAGAAGCACCTGAGCGCCAGCTGTCCTAGCAGAGTC
TCACCTATACATAACCGAGAAGAACCCAGACTAAGAGGAGAGAAACATGT
CTCATCAACACAGACCTCTACACTACCCTCTCATCATTGATGCCTGTAAC
TGCATGTGGTCAGACTCACAGCGGCTTAACAGAGGGAAAAATGCAAATAC
TAAGTTTCTTGCCAATGTACATGAACTAAATCCCAGAAGAGAAATTTGAT
TGATCTAGAGAAAAAAATGTGTAAATTTTCTATTTATCATCCACCTGGAT
TTGTATATTACCACTCATATATCTCTTAACATATTATACCTTTTTGTATG
CCCGACATATCGCATATCATGTGCCAAGCAATCTGCACTCCATAAGTGTG
AGACTATAAACCATAGACGATATTCCCTATGAGGACCATTCATTTTATAT
ACTCCCTTTTCTCCACTAGCGATTTTCGACATCTCTCGTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_n15.g1 MSMg01no152_n15.g1 CHROMAT_FILE:
MSMg01no152_n15.g1 PHD_FILE: MSMg01no152_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:04 2005
         (355 letters)



>mm_chr8_29379891_29380645
          Length = 755

 Score =  617 bits (319), Expect = 0.0
 Identities = 351/373 (94%), Gaps = 18/373 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagggacagcagattgtacacaaagaagagagagagagagagagagagagagagagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ataagggacagcagattgtacacaaagaagagagagagagagagagagagagagagagag 242

                                                                       
Query: 61  agaga------------------ctatgcccaggctggaaaagactttgccctggaccat 102
           |||||                  |||||||||||||||||||||||||||||||||||||
Sbjct: 243 agagagagagagagagagagagactatgcccaggctggaaaagactttgccctggaccat 302

                                                                       
Query: 103 ggagaagcagatgctatggcaagttatagaatcaatgcttcaaaaaggcttgaaggtcaa 162
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 303 ggagaagcagatgctatggcaagttgtagaatcaatgcttcaaaaaggcttgaaggtcaa 362

                                                                       
Query: 163 aggcaagggcagggtcaaggagaaaaacagaagcacctgagcgccagctgtcctagcaga 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aggcaagggcagggtcaaggagaaaaacagaagcacctgagcgccagctgtcctagcaga 422

                                                                       
Query: 223 gtctcacctatacataaccgagaagaacccagactaagaggagagaaacatgtctcatca 282
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 423 gtctcacctatacataaccgagaagaacccaaactaagaggagagaaacatgtctcatca 482

                                                                       
Query: 283 acacagacctctacactaccctctcatcattgatgcctgtaactgcatgtggtcagactc 342
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 483 acacagacctctacactaccctctcatcattgatgcctgtaactgcatgtggccagactc 542

                        
Query: 343 acagcggcttaac 355
           |||| ||||||||
Sbjct: 543 acagtggcttaac 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)