BAC Information

Click to search

BAC

Clone NameMSMg01-153B18
Chromosome8 (Build37)
Map Location 88,001,842 - 88,002,394
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik
Downstream geneGpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153B18.T7 (MSMg01no153_b18.b1)MSMg01-153B18.TJ (MSMg01no153_b18.g1)
ACCAG354799AG354800
length720700
length of high quality
(start - end)
557 (45 - 601)301 (58 - 358)
definitionCHROMAT_FILE: MSMg01no153_b18.b1 PHD_FILE: MSMg01no153_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:24 2005CHROMAT_FILE: MSMg01no153_b18.g1 PHD_FILE: MSMg01no153_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCATTTGCCCATTGAAATGGAGACCAGGGACACAGTCATCTTTTG
TGTCTTGGGCCTAATTTCCATGTTTGAAACCTGGGATTTAAAATGGCCTA
TTCAGAAAGAAAATTTACACTTCATTAGAGCAAATGTTCAACTGGAGTCC
ATGATTTCCATCCAGTTGTGAGCTGTACTTGTGAACCAGCTGTGCAGAGC
AGCCAAGGAGAGTGGTGGACAACAAACGGCTTATTAATCAGTTCGTTGTA
TCATATGACACAGGCTGGGAACAAAACCATGACTCCAGTCCTGAGCTCTA
GAGCCGTGTTTGTGAATCAAACGCCATGTTGGAGGCTCATTCATCAGCTA
TCCTTGAAACTCTAGACCAACTTCAAAACAAACCCAACTCCATCCTACAA
GTGGGAGGTCTTGGAAGCTGTTGATTGATGATTGTTGTTGAGTGAGGGGA
TAATGAAAAGGCCATTTTCAGTCAGTCTTTCTTAGACTCTTCAGAAATAT
GCTTGGATTCCCACAGTCCTGCCTCCCTGGGGACAGTTGGTCTTTGTTTA
AGCAGCACATACTGGTCTTTATCCAGGCATTCACATACTTACTGAGGACT
TGCTGTGTAATGATTACCCTATCTATCANGCACTGTTACCAAATCTGAAG
GTCACTGCAATGTCAAGGAA
TGGCGGCCGCCTGTTTCACACCACXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAATGAAAATAAAGACACAGCATAACCAAACTTATGGGACACAA
TGAAAGCAGTGCTAAGAGGAAAATTCATAGCACTATGTGTCCTGGTAAAG
AAATTGGAGAGATCCTACACTAGCAACTTAGCAGCACACCTGAGAGATCT
AGAACAAAAAGAAGCAAACACACCCAAGAGGAGTAGAAGGCAGGAAATAG
CCAATCTTAGAGCTGAAATCAAACAAATAGAAACAAAGAGAACTATACAA
AGAATCTACAAAACCAAAAGCTGGGTTGGATTTTTTTGGTTTTTTTTTTT
GTTTTGTTCTGTTTTGCTTTGCTTTTGTTTTTTGAGAAAATCCCGAAGAC
CCATAAACAAGATAGATCAATCCCTAGCCAAAATACCCTAAAGAGCCTAT
CAGATCCTACTACAAAACCCTATACTCACCAAAACTGGAAAACCTAGATG
AAACGGCCCGACGTTTTAATCAAATACCCACATATCATCGTTAAATGAAT
AGCTGACAATCTACCTCACCACGTCCCCTATTTCCTACGGAATTTACCCA
AGTCCTTAACAGTCTCCCAACCTAAAGCATTGGACGAGATGGCCTTCGCG
CTTTAATTTCCCAGACCCTCACAGACCACCGACCACCATTATTCCTCACG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_b18.b1 MSMg01no153_b18.b1 CHROMAT_FILE:
MSMg01no153_b18.b1 PHD_FILE: MSMg01no153_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:24 2005
         (557 letters)



>mm_chr8_88001638_88002594
          Length = 957

 Score = 1023 bits (529), Expect = 0.0
 Identities = 547/553 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcatttgcccattgaaatggagaccagggacacagtcatcttttgtgtcttgg 64
           ||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcatttgaatattgaaatggagactagggacacagtcatcttttgtgtcttgg 264

                                                                       
Query: 65  gcctaatttccatgtttgaaacctgggatttaaaatggcctattcagaaagaaaatttac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcctaatttccatgtttgaaacctgggatttaaaatggcctattcagaaagaaaatttac 324

                                                                       
Query: 125 acttcattagagcaaatgttcaactggagtccatgatttccatccagttgtgagctgtac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acttcattagagcaaatgttcaactggagtccatgatttccatccagttgtgagctgtac 384

                                                                       
Query: 185 ttgtgaaccagctgtgcagagcagccaaggagagtggtggacaacaaacggcttattaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtgaaccagctgtgcagagcagccaaggagagtggtggacaacaaacggcttattaat 444

                                                                       
Query: 245 cagttcgttgtatcatatgacacaggctgggaacaaaaccatgactccagtcctgagctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagttcgttgtatcatatgacacaggctgggaacaaaaccatgactccagtcctgagctc 504

                                                                       
Query: 305 tagagccgtgtttgtgaatcaaacgccatgttggaggctcattcatcagctatccttgaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagagccgtgtttgtgaatcaaacgccatgttggaggctcattcatcagctatccttgaa 564

                                                                       
Query: 365 actctagaccaacttcaaaacaaacccaactccatcctacaagtgggaggtcttggaagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actctagaccaacttcaaaacaaacccaactccatcctacaagtgggaggtcttggaagc 624

                                                                       
Query: 425 tgttgattgatgattgttgttgagtgaggggataatgaaaaggccattttcagtcagtct 484
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 625 tgttgattgttgattgttgttgagtgaggagataatgaaaaggccattttcagtcagtct 684

                                                                       
Query: 485 ttcttagactcttcagaaatatgcttggattcccacagtcctgcctccctggggacagtt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcttagactcttcagaaatatgcttggattcccacagtcctgcctccctggggacagtt 744

                        
Query: 545 ggtctttgtttaa 557
           |||||||||||||
Sbjct: 745 ggtctttgtttaa 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)