BAC Information

Click to search

BAC

Clone NameMSMg01-153D23
Chromosome8 (Build37)
Map Location 62,007,368 - 62,007,669
singlet/doubletsinglet
Overlap genenone
Upstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
Downstream geneAadat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153D23.T7 (MSMg01no153_d23.b1)MSMg01-153D23.TJ (MSMg01no153_d23.g1)
ACCAG354899AG354900
length732738
length of high quality
(start - end)		692 (41 - 732)655 (70 - 724)
definitionCHROMAT_FILE: MSMg01no153_d23.b1 PHD_FILE: MSMg01no153_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:34 2005CHROMAT_FILE: MSMg01no153_d23.g1 PHD_FILE: MSMg01no153_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCAGTTCCGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGA
AGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGT
CTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATT
TAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTT
CTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGCTCTGTA
GTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCT
TGAGAAGAGTTTTTGCTATCCTAGGTTTTTTG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTAAAGTTCTTTGCTGCCTTTTTGAAACCA
TCCTAGAAATCATGGAGGCTCTCAAGGGACATAGTTTTTTCTGTTGGTTC
ATACAACAATTTAATTTGCTTTCCTTCAAACAGAAATGGAAAGAACTGAA
GGGCTAAATAGTAATACTTGTTGAGATTCCAAAACAAATATTAAATTAAA
TAACTTATTTGCTTCAAAACCTAAATTCAATACCACTTTTGTCTTTGAAA
CATGTGGATGAGTTCCTTATAAAGATAAAAGTCCCTCCAAGTCAGACAAA
CTCTATATATCATATTTATTTTTTAAAATTTGTGGATATAATTACATTAT
TTCCCCTTCCTGTTTTCCTTCTAAACTCTTTCATGTACCTTTATGTATTC
TCCACCTCTCATCACTGAACATTTTATTTTGAGGAGACAAAAATCATTGC
AGGAAACTACATCAAATAAAACTGGAGAATTTTGAAGCCCAGCCCACTTC
TAAATGGTGTATCTGCAACACAGTTCCTGCACCTAAGACTCATTGCAGAG
TGTGGGTGGAAAAGATTGTAAGAGCCAGAGAAATACAGGGAGATTGCTTT
GAATTTTTGTCTCTTAGAAATGTCAGCATCTACTCCCATAAAGTTTCATC
AACATGGCTGCCTAAATCAGACCTGAAAAAGGATTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_d23.g1 MSMg01no153_d23.g1 CHROMAT_FILE:
MSMg01no153_d23.g1 PHD_FILE: MSMg01no153_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:34 2005
         (655 letters)



>mm_chr8_62007175_62008229
          Length = 1055

 Score =  547 bits (283), Expect = e-160
 Identities = 298/303 (98%), Gaps = 1/303 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaagttctttgctgcctttttgaaaccatcctagaaatcatggaggctctcaaggga 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 attaaagttctttgctacctttttgaaaccatcctagaaatcatggaggctctcaaggga 436

                                                                       
Query: 61  catagttttttctgttggttcatacaacaatttaatttgctttccttcaaacagaaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 catagttttttctgttggttcatacaacaatttaatttgctttccttcaaacagaaatgg 376

                                                                       
Query: 121 aaagaactgaagggctaaatagtaatacttgttgagattccaaaacaaatattaaattaa 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 375 aaagaactgaagggctaaatagtaatatttgttgagattccaaaacaaatattaaattaa 316

                                                                       
Query: 181 ataacttatttgcttcaaaacctaaattcaataccacttttgtctttgaaacatgtggat 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 315 ataacttatttgcttcaaaacctaaattcaataccacttttgtatttgaaacatgtggat 256

                                                                       
Query: 241 gagttccttataaagataaaagtccctccaagtcagacaaactctatatatcatatttat 300
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 255 gagttccttataaagataaaagtccctccaagtcagacaaactctatacatcatattt-t 197

              
Query: 301 ttt 303
           |||
Sbjct: 196 ttt 194


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |