BAC Information

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BAC

Clone NameMSMg01-154G12
Chromosome8 (Build37)
Map Location 60,363,449 - 60,363,946
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154G12.T7 (MSMg01no154_g12.b1)MSMg01-154G12.TJ (MSMg01no154_g12.g1)
ACCAG355707AG355708
length687778
length of high quality
(start - end)
501 (36 - 536)39 (312 - 350)
definitionCHROMAT_FILE: MSMg01no154_g12.b1 PHD_FILE: MSMg01no154_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:02 2005CHROMAT_FILE: MSMg01no154_g12.g1 PHD_FILE: MSMg01no154_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTATG
GCAGTCCCTATTGAAGTGAATGTAGGAAAAGAAGCTATGCGAATATTAAA
ATTGCAATTCAGGTTCTGACACAGCAAAGGTCCTTTAGAATCACACTTGG
CCACCTGGCTATCACCGGAGAGAAATGCATTAATATTAGCAACAAATCTA
TTGGAATATATTACTAATGTCTTTGATTTAATCTCTTACATGTATTCATT
GGGCATCTACCTACTGTGTACAGTTCATGACTAATTTAGAGAGTAAGAAA
TAGAATAGAATAAAGTAAGACCTTTAAAACAAATTTTTGTTTCTGTGTGG
GTGTAGCTATGTATGGGTATACACACGAGTGCAGGTGCGGGTAGAGTCCA
GAAGAGGGAGCCAGTTGTCATGGTGCTGGAATTACAGATGGTTGTGAGCC
TCCCAACAGGATTCTGAGAATTGAACTCTGGCCCTCATGAAGAGTATATG
GGCTCTGAACTGCTCACCCCTTTTTCTAGCCCTAAAATAAATAGTTTTGA
GGATGTACATTTTGTGTAATTGGCAAGATCAAAGATCCTAAACGATAGAT
TTATCCCTTGCTCCTAAGAAAGTGCCCAGGGTATATACGAATTCTCATGT
AACTTTTACTTTTTTGTACTAATACCGATTTTATATA
NTTTTTTTTTNTNTTNTTTTCCNCCCNCNNTCCCCCCCCCCCCCCTCCCT
NTCNCCGATGATATGGGTAGCCTGGCGGNCGCCGGTTTCCGACTCGANGN
GAACNANAGAAGGTTACAGGACGACGGGCNNNANGNCCNCNACCANCANC
AGGAGAAAGGCNNNNAAANCCAGCCCCACCNNNNCAGGNGNGNNAGGGGG
NCCGGGANGGGGCGAAGAGGGCGNNCGGGGNNCGGAAGANGGNGAANGGC
CCCGGCNNCCGGCAGCAGGACNCCAACGNNCACCNNNCGCCANCGGGCAA
GCNCGGTTTTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTG
TTGATTTTGCTACCCTCTATTTTTTTTTTTGGGAGNAAAGCACGCCCCAC
AGAAGAGCAGAGGTTAGAGCCCCCCCCGCACGCAAGANCGCCACNCGCAG
GGAAGGAGAACAGCCAACCGGAGAAAGAAACACAACCCGAACGAAGGAGA
AGGCCCAAAAAAGGAACACCCCACAGAAGACGAGGAAGCACCGACCAGCA
AAGGCGACCAGAAGGCCCCGGAGCGAAAAGAAGACCACCGCCCCAGAACA
CACCGGGGGACACCGGCCAGGAAAGGGGGGCCCGCCAGAACGGGACAAAG
AAGCCGGAAGGCGGCCCACGACGGACCCGGGCGGAAGCGGGCCAAAACCC
ACCGAGAGGACAGGCACGAAACCAAAACAAGGGCCAACAGAATTTTTTTT
TTCCGACAACATAATTGTTAATCCACGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_g12.b1 MSMg01no154_g12.b1 CHROMAT_FILE:
MSMg01no154_g12.b1 PHD_FILE: MSMg01no154_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:02 2005
         (501 letters)



>mm_chr8_60363245_60364145
          Length = 901

 Score =  886 bits (458), Expect = 0.0
 Identities = 488/498 (97%), Gaps = 1/498 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatggcagtccctattgaagtgaatgtaggaaaagaagctatgcgaatattaa 64
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttattgcagttcctattgaagtgaatgtaggaaaagaagctatgcgaatattaa 264

                                                                       
Query: 65  aattgcaattcaggttctgacacagcaaaggtcctttagaatcacacttggccacctggc 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattgcaattcaggttctgacacggcaaaggtcctttagaatcacacttggccacctggc 324

                                                                       
Query: 125 tatcaccggagagaaatgcattaatattagcaacaaatctattggaatatattactaatg 184
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 tatcaccagagagaaatgcattaatattagcaacaaatctattggaatatattacttatg 384

                                                                       
Query: 185 tctttgatttaatctcttacatgtattcattgggcatctacctactgtgtacagttcatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctttgatttaatctcttacatgtattcattgggcatctacctactgtgtacagttcatg 444

                                                                       
Query: 245 actaatttagagagtaagaaatagaatagaataaagtaagacctttaaaacaaattttt- 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 actaatttagagagtaagaaatagaatagaataaagtaagacctttaaaacaaatttttt 504

                                                                       
Query: 304 gtttctgtgtgggtgtagctatgtatgggtatacacacgagtgcaggtgcgggtagagtc 363
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 505 gtttctgtgtgggtgtagctatgtatgggtatacacacgagtgtgggtgcgggtagagtc 564

                                                                       
Query: 364 cagaagagggagccagttgtcatggtgctggaattacagatggttgtgagcctcccaaca 423
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagaagagggagtcagttgtcatggtgctggaattacagatggttgtgagcctcccaaca 624

                                                                       
Query: 424 ggattctgagaattgaactctggccctcatgaagagtatatgggctctgaactgctcacc 483
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 625 ggattctgagaattgaactctggccctcaggaagagtatatgggctctgaactgctcacc 684

                             
Query: 484 cctttttctagccctaaa 501
           ||||||||||||||||||
Sbjct: 685 cctttttctagccctaaa 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)