Query= MSMg01no155_f14.b1 MSMg01no155_f14.b1 CHROMAT_FILE:
MSMg01no155_f14.b1 PHD_FILE: MSMg01no155_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:14 2005
(345 letters)
>mm_chr8_18981840_18982584
Length = 745
Score = 598 bits (309), Expect = e-175
Identities = 336/345 (97%)
Strand = Plus / Minus
Query: 1 tagaaatttttgagacattaaagaaaactcatctataaaagattaaggggaaataatgga 60
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 545 tagaaatttttgagacagtaaagaaaacgcatctataaaagattaaggggaaataatgga 486
Query: 61 atggaaagatttaaattacattagaaaatatagagcaggataaaggaggaatatggaaag 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atggaaagatttaaattatgttagaaaatatagagcaggataaaggaggaatatggaaag 426
Query: 121 ggataaagattttttcagagaactcaggtgcaaacctgctactttaaaagcaccattctg 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 425 ggataaagattttttcagagaactcaggtgcaaacctgctattttaaaagcaccattctg 366
Query: 181 tatatatctatggctacatgtttacatataggttttcggagctacaaagagaaccataag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tatatatctatggctacatgtttacatataggttttcggagctacaaagagaaccataag 306
Query: 241 atggttaaagagaagtttcaaggatgagtgaagtttgattaaaatgaagcatactaaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atggttaaagagaagtttcaaggatgagtgaagtttgattaaaatgaagcatactaaaag 246
Query: 301 tggaatgataaggggagtattaaccatgaaaggatatgaagagaa 345
||||||| ||| || |||||||||||||||||| |||||||||||
Sbjct: 245 tggaatggtaaaggaagtattaaccatgaaagggtatgaagagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space: 247296
Effective search space used: 247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_f14.g1 MSMg01no155_f14.g1 CHROMAT_FILE:
MSMg01no155_f14.g1 PHD_FILE: MSMg01no155_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:14 2005
(553 letters)
>mm_chr8_18911803_18912755
Length = 953
Score = 978 bits (506), Expect = 0.0
Identities = 542/554 (97%), Gaps = 2/554 (0%)
Strand = Plus / Plus
Query: 1 tttatctcaaggcaagcactttgctgacagttctctccctagccatggacccaggcctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatctcaaggcaagcactttgctgacagttctctccctagccatggacccaggcctca 260
Query: 61 ttagttaagagcagttgtgaaggccagagacaccatgcacagatgtccgagttctgcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagttaagagcagttgtgaaggccagagacaccatgcacagatgtccgagttctgcttt 320
Query: 121 ttgtgaagcatctggcagagggcacagatgaagataaatttcactcagccagggaaacct 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgtgaagcatctggcagagggcacagatgaagataaatttcactcagccagggaaacct 380
Query: 181 tttgcctgtgacctgtatacaggggtctaagaacgcagcaatggctggatcctgagcggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tttgcctgtgacctgtatacaggggtctaagaacgcagcaatggctggatcctgagcagt 440
Query: 241 ggccatgcactgagtgtttggggcacagaaaccagtaaaatataagcc-ctgtccttcag 299
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct: 441 ggccatgcactgagtgtttggggcacagaaaccagtaaaatataagccact-tctttcag 499
Query: 300 aaatcagctgcctagaggggaagaaagagtgacggacagggtgctctctgtggtagtgtt 359
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaatcagctgcatacaggggaagaaagagtgacggacagggtgctctctgtggtagtgtt 559
Query: 360 tctgcaaattcattcttgcttggttcttgaaactgataattcactgagggtttttaacat 419
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 560 tccgcaaattcattcttgcttggttcttgaaactgaaaattcactgagggtttttaacat 619
Query: 420 ggtgacagcatattaggtgcttacataatctcaaaactacgcccctgcattggcatcagg 479
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 620 ggtgacagcatactaggtgcttacgtaatctcaaaactatgcccctgcattggcatcagg 679
Query: 480 cctatcatggggagccagagccagaggaacctcaccagaggtggaagaactaacagggtg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cctatcatggggagccagagccagaggaacctcaccagaggtggaagaactaacagggtg 739
Query: 540 tgttttgacttcac 553
||||||||||||||
Sbjct: 740 tgttttgacttcac 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
