BAC Information

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BAC

Clone NameMSMg01-155L12
Chromosome8 (Build37)
Map Location 75,265,591 - 75,383,187
singlet/doubletdoublet
Overlap geneSin3b, F2rl3, Large
Upstream geneEG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1
Downstream geneLOC100039001, LOC666134, Crry-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155L12.T7 (MSMg01no155_l12.b1)MSMg01-155L12.TJ (MSMg01no155_l12.g1)
ACCAG356652AG356653
length723736
length of high quality
(start - end)
331 (189 - 519)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no155_l12.b1 PHD_FILE: MSMg01no155_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:41 2005CHROMAT_FILE: MSMg01no155_l12.g1 PHD_FILE: MSMg01no155_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,265,591 - 75,265,921)(75,382,906 - 75,383,187)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCTT
CTTTGACAAGGTGAGCAAGGCCCTCTAAGGCCCTCTCCATCTGGACACAG
CTGCTTCCTGCCAATGCCTTGTGTGGGGCCCCGGAAGCAGGGCCACTGTG
GTGCGTGGGGGAGAGCAGCGTAGACCGCAGAGGCAGCCCAGACAGTTCAG
GGTCATGCACATATCCTTCCATACAGACACATTTATGAGGCTTCTGCCTG
GTGCACACATCTTTTGCAGCCGTGTCTCTAGCGTCCCTATCTCTTTACTC
TCACAGGTGCGCAGGGTGCTGAAGAGCCAGGAGGTATATGAGAACTTTCT
GCGCTGCATTGCGCTCTTCAATCAGGAGCTGGTGTCCGGGTCTGAGTTGC
TGCAGCTTGTCAGTCCATTCCTGGGGTAAGTGGCTCCCGACTCCTAACTC
CTGGGCTTTCTCCTATTCCAGCCAGACCCAGGGCAAGTGAGTTGTAAAGT
TTGCTCATGTGATTTGTTGTTTTAAACCTTACTTTATTTTCTATGTGTAC
CCCGGTCCCGACCAGAGAACAAGTTCTTGGATGGGTATAGGCTCAGATTA
TTCACAACCTACTTTAATAAGAGTTCCTAAATGCTTCGGTCCCCCTTTTA
GTCCACCCCCCCTCTTAGGTAGTACACCCGACAGGTCTTTCAGGTACACG
CACCCTGTAGACCTGTTTAGAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCGCAACCTCTACCTGACCTTCT
TGGAGTATGATGGCAACCTCCTGCGGCGGGAGCTGTTTGGCTGCCCCAGT
GAGACTGATGTCAACAATGAAAATGTGAGTGTTCCACAGATCATCAGGGA
GATTGGCCATACTCTTATTTGTCTGTGTTGGGTCCTTGTTGGGTACTACA
TCCAGCTCAGGGAACAACTTAGCTGCCATGGAATCCATGACCCAGTACAT
CATCTGGAGACTTTCTGTGGATCACTGTTGATATGGGAGGAGATATTAGC
TCAGCTGAATAGATAAGCATGAGTTTACAAACAAAAGAAACTATCCGTTA
TCTATGTCTGCTTCATGGCCAGTAAACTCCCAAGCATGTAGTGGTAAAGG
CATCCACATAGAACTCATGATTAATCTTGGTTGGTACCTAGGGTGACACA
GAAGGAGACTCCCACAGGGACTGGCATCTTCCCAGTTAGTTTGGACCAGG
AAAACATTGACTGAATAGTTCGAACCTATTGGATGCTTTGGTTGCTACCT
GCTTTATCCAGTTTTTCCTCCCCCCACGTTATAACCTATGTTCATTCCTT
GCGCCCCTTTACTATGGAACATGCTCCAATTAACCATTTACCCCAAGTTG
TTCTTGTCTACCCCCTCCTTACTTTCCTGTACCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_l12.b1 MSMg01no155_l12.b1 CHROMAT_FILE:
MSMg01no155_l12.b1 PHD_FILE: MSMg01no155_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:41 2005
         (331 letters)



>mm_chr8_75265391_75266121
          Length = 731

 Score =  625 bits (323), Expect = 0.0
 Identities = 329/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacagttcagggtcatgcacatatccttccatacagacacatttatgaggcttctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacagttcagggtcatgcacatatccttccatacagacacatttatgaggcttctgcc 260

                                                                       
Query: 61  tggtgcacacatcttttgcagccgtgtctctagcgtccctatctctttactctcacaggt 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtgcacacatcttttgcaaccgtgtctctagcgtccctatctctttactctcacaggt 320

                                                                       
Query: 121 gcgcagggtgctgaagagccaggaggtatatgagaactttctgcgctgcattgcgctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgcagggtgctgaagagccaggaggtatatgagaactttctgcgctgcattgcgctctt 380

                                                                       
Query: 181 caatcaggagctggtgtccgggtctgagttgctgcagcttgtcagtccattcctggggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatcaggagctggtgtccgggtctgagttgctgcagcttgtcagtccattcctggggta 440

                                                                       
Query: 241 agtggctcccgactcctaactcctgggctttctcctattccagccagacccagggcaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtggctcccgactcctaactcctgggctttctcctattccagccagacccagggcaagt 500

                                          
Query: 301 gagttgtaaagtttgctcatgtgatttgttg 331
           ||||||||||||||| |||||||||||||||
Sbjct: 501 gagttgtaaagtttgttcatgtgatttgttg 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_l12.g1 MSMg01no155_l12.g1 CHROMAT_FILE:
MSMg01no155_l12.g1 PHD_FILE: MSMg01no155_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:41 2005
         (282 letters)



>mm_chr8_75382706_75383387
          Length = 682

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccgcaacctctacctgaccttcttggagtatgatggcaacctcctgcggcgggagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttccgcaacctctacctgaccttcttggagtatgatggcaacctcctgcggcgggagctg 423

                                                                       
Query: 61  tttggctgccccagtgagactgatgtcaacaatgaaaatgtgagtgttccacagatcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tttggctgccccagtgagactgatgtcaacaatgaaaatgtgagtgttccacagatcatc 363

                                                                       
Query: 121 agggagattggccatactcttatttgtctgtgttgggtccttgttgggtactacatccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agggagattggccatactcttatttgtctgtgttgggtccttgttgggtactacatccag 303

                                                                       
Query: 181 ctcagggaacaacttagctgccatggaatccatgacccagtacatcatctggagactttc 240
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 302 ctcagggaacaacttagctgccatggaatccatgacccagtacatcatttggagacttcc 243

                                                     
Query: 241 tgtggatcactgttgatatgggaggagatattagctcagctg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgtggatcactgttgatatgggaggagatattagctcagctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)