BAC Information

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BAC

Clone NameMSMg01-155N16
Chromosome8 (Build37)
Map Location 43,815,756 - 43,815,966
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671994, Zfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155N16.T7 (MSMg01no155_n16.b1)MSMg01-155N16.TJ (MSMg01no155_n16.g1)
ACCAG356752AG356753
length760733
length of high quality
(start - end)
212 (70 - 281)421 (78 - 498)
definitionCHROMAT_FILE: MSMg01no155_n16.b1 PHD_FILE: MSMg01no155_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:51 2005CHROMAT_FILE: MSMg01no155_n16.g1 PHD_FILE: MSMg01no155_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAAACAGGATCCGCGG
AATTCAACTTATCCAGAACAACCTTGAAATCAAAGGTTCAGAGGCTCAAC
TCCGTGGCTGGAGATTGGAGATAGCATTTCTTTGAACTGGTTGCATGATT
GCACATGATGTCATTAGAGCTTGCCTTTCCAGCGAGTGAATGAGAAAGGA
GAGTTGTCTAGGAGCTGGCATACATAGAAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGCTTTACTACGCAAACTTC
TTAAAGTTTCCATCTTTTTTAACAAATTCCAAGCTGACAATGAAGACCTT
AACACATGATTATTTATAGGATGTTACGGACTCCCACCCTATCATTGGTC
ACAAATTATATTCCATAAATGCATAGATTTTTCTCTAAAACATTATTCTA
CGATATCTTAATCCAATGATTATAATACCCTCCTGGAGAGGTCTGTGACC
TTTTATTTCTTTCCCCTGCTATAATGAGCCATACCGCCTCACGATCCACA
ACTGACACCTCTTTGCCCCTACCCCATGAAGCTGTCCTCTCCCCACATTA
TTTTGTTCCGCCTCTAAAACCACCCCAGTTCTCCACCTTCCCTTTCCCAA
TGTGATCCCCCCTCTCCTAACTCATCACACCTGAAAAATTTCCCATTCCC
TCCCCTCCGCCCCCCCTGGGTCCCCCTCTCCCCCACCCATTTTTTCCCCT
CTTTCGGCCN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATCCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGACA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCCCAAAGAAACTCCACCAATATGTATTCCCTGATA
AGTGGATATTAGCCCCCAACCTAGGATACCCAGATATAAGATATAATTTG
TCTAACCCCTGAACCTCCATAAAACGAAGATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_n16.b1 MSMg01no155_n16.b1 CHROMAT_FILE:
MSMg01no155_n16.b1 PHD_FILE: MSMg01no155_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:51 2005
         (212 letters)



>mm_chr8_43815608_43816219
          Length = 612

 Score =  408 bits (211), Expect = e-118
 Identities = 211/211 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccttgaaatcaaaggttcagaggctcaactccgtggctggagattggagatagcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaccttgaaatcaaaggttcagaggctcaactccgtggctggagattggagatagcattt 300

                                                                       
Query: 61  ctttgaactggttgcatgattgcacatgatgtcattagagcttgcctttccagcgagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctttgaactggttgcatgattgcacatgatgtcattagagcttgcctttccagcgagtga 240

                                                                       
Query: 121 atgagaaaggagagttgtctaggagctggcatacatagaagagagagagagagagagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atgagaaaggagagttgtctaggagctggcatacatagaagagagagagagagagagaga 180

                                          
Query: 181 gagagagagagagagagagagagagagagag 211
           |||||||||||||||||||||||||||||||
Sbjct: 179 gagagagagagagagagagagagagagagag 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)