BAC Information

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BAC

Clone NameMSMg01-155O10
Chromosome8 (Build37)
Map Location 4,496,970 - 4,497,257
singlet/doubletsinglet
Overlap geneLass4
Upstream geneZfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1
Downstream geneVmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155O10.T7 (MSMg01no155_o10.b1)MSMg01-155O10.TJ (MSMg01no155_o10.g1)
ACCAG356785AG356786
length738762
length of high quality
(start - end)
288 (72 - 359)242 (72 - 313)
definitionCHROMAT_FILE: MSMg01no155_o10.b1 PHD_FILE: MSMg01no155_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:54 2005CHROMAT_FILE: MSMg01no155_o10.g1 PHD_FILE: MSMg01no155_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXNATCCGGAGGAGCCGCGGAAT
TCATGCCAGTTACAAAGAAACTGTTAAAATTCTGCTATGGTGATTCAACT
AAGGATGGATTGGGCAGAGAAACAGTATTCCAAACCAAAAAGGATAAGCA
GATACAAGGCTCTAAGCACATTGCTGGGCACTTGGAGGAGTAATTAGTAG
AGATTTGAAAGAACATTGAGATCTATGGGGGCTGGAGAGATTGCTCATTG
GTTCTTGCTTGCAGAGGACCTGAGTTCAGATCCCAGCACCCCCAATTATG
TGGCTTACAACGACTTGTCGTAATTCTAGCTCCAGGGAATTTAATGCCCT
CTTTTGGCCTCTTCCTGCACCACCGCCATGTTCTTGTGTTTTCTGCCAGC
CCCACCCCAACACCTATCAACTAACTAATCACCCCTCACCCTACAAAATA
ACCTTGAAGTCCAGGGGAGAGCAGGATGGCTAGGCCTCAACAAGGAATTT
ATATGCTATTTTAACCCTAGAGAACAAAACAGCGCGTGTGTATGGTGCTC
GTGGTGGCAGGAGCCAGGAGACCAGAATATAGGTGACTGTTCCAGAGCGG
TTCGGACGGTTCGACCATTTCCCGAACCCTGTTTTCCCTATTTGCCCTGC
CATTCCTCTTTTTTTTTTATCTTACTTGCCCGGTCGATCTCCCCCTTCTT
TTTCCCCTTGCCTCCACCCCCCCGTCTTTTTTCCCCCT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGTTCCTGGAGGCAGGCCGGGAGACAG
AAGGATGGAGAAGGAGTTTTGCCATGCTTTTGAGGGTGAAGAACCCAGTA
GGCATGTGTTGTTTTGAGAGAACCCGGGGCCTATGGCTACTACTACAATG
CTGGAGGTCAGGGAGTAGATGGGACTAGCTACTGAAGTTTAGGACAGATT
CAAGAAGCAGAGCTAACAGCAATGGTAAGGGCATATTTTCCAGGTGAGAG
GTAGTAGAACCCAGGAATAGTGTTCCAAGGCATGTTGAAGAGGAATAATT
GTGCATGTGTCTTTTATCTGCATATTCAAGTGAAGTCGAGCGCCGGCTGT
TAGTGCATTCACCCCCTGGAGCATAAATGGTTAGTCCACAACTACACACC
ACAGCATGCTACATCGGATCCGTTCCTAGGGAAACCTCTAATATATCCCT
CCTCTGATATCTCTGACTCCAGAGATTCCCGTTACCTGCTTGCATTACGG
CCTTATCATCCTGCCCTACTCACTCTATCCCTACCCTATTTCTTTTTTTT
CCTTGTTCGTTTTCTTTTTTTTCCCCCTTTCTCATTTCTTTCGCCATCCG
TTTTTCCCCCTTTTTTCCCCTTTTTTTTTCCCCCCCCCCCCTTTTTTCGC
GAAACCTCACTCCCCCCGCCCTCTTTTATCCACTTTCCCGTATTCCCATT
TTTTCTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_o10.b1 MSMg01no155_o10.b1 CHROMAT_FILE:
MSMg01no155_o10.b1 PHD_FILE: MSMg01no155_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:54 2005
         (288 letters)



>mm_chr8_4496770_4497457
          Length = 688

 Score =  522 bits (270), Expect = e-153
 Identities = 284/290 (97%), Gaps = 4/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttaaaattctgctatggtgattcaactaaggatggattgggcagagaaacagtattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttaaaattctgctatggtgattcaactaaggatggattgggcagagaaacagtattcc 260

                                                                       
Query: 61  aaaccaaaaaggataagcagatacaaggctctaagcacattgctgggcacttggaggagt 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 aaaccaaaaaggataagcagatacaaggctccaagcacattgctgggcacttggaggagt 320

                                                                       
Query: 121 aattagtagagatttgaaagaacattgagatctatgggggctggagagattgctcattgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattagtagagatttgaaagaacattgagatctatgggggctggagagattgctcattgg 380

                                                                       
Query: 181 ttcttgcttgcagaggacctgagttcagatcccagcacccccaattatgtggcttacaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttgcttgcagaggacctgagttcagatcccagcacccccaattatgtggcttacaac 440

                                                             
Query: 241 gacttgtcgt--aattctagctccagggaatttaatgccctcttttggcc 288
           ||||||  ||  || |||||||||||||||||||||||||||||||||||
Sbjct: 441 gacttg--gtgaaactctagctccagggaatttaatgccctcttttggcc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)