BAC Information

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BAC

Clone NameMSMg01-156B17
Chromosome8 (Build37)
Map Location 58,947,472 - 58,947,760
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948
Downstream geneBC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2, Scrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156B17.T7 (MSMg01no156_b17.b1)MSMg01-156B17.TJ (MSMg01no156_b17.g1)
ACCAG356931AG356932
length741746
length of high quality
(start - end)
318 (45 - 362)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no156_b17.b1 PHD_FILE: MSMg01no156_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:09 2005CHROMAT_FILE: MSMg01no156_b17.g1 PHD_FILE: MSMg01no156_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATCC
AGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGG
CGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGAT
TCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATA
GTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATC
AGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCA
GTCTCTGTTTTTTTGCTCTCCTCTCTCACCGGAAGGTGTACAGTTATCTG
GTGTTTGGACCTCCCCCCCCCTGAAGGTGAAGGCCCAAAACAGGATCTTT
CCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGTC
GAAGATGTTGCCGCCTCAGAAGCTCTGTGGCTCTTGTCCGGAAGGAGGCC
GGCCGTCTGGAGCTGAGGTTGTCGCAGCCTCAGAAGCTCTGTGGCTCTTG
ACTGGAAGGTGGCTGGTTGTCTGGAGCTGATGATGGCGCCGCCCCAGAAT
CTCTGCGACTCTCTCGCCCGTCCCAGAAACGGTTGGTACTCTGTATTTCA
TACGGTCATCCGTGCAGCCTGCCCTCCGCGGAGTTCTTGAG
CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTTTGTTTGACACATATCTAAAGAT
TGAATGTGCCTAATGAAGGGTTCCATTCAGTCTACAGAAGAGAGAGTAAA
TATGGATTTTTAAAGAGGTTTTCTTTAAAAGAAAAAAAAAACACTCATTT
ACTATGTATAGTGCCCTGCCAGCATGTATGACTGCAGGCCAAAACAAGGG
ACCAGATCTCATTACAAATGGTCATGAGATTCCATGTAGTTTCTGGGAAT
TGAACTCAAGACCTCTTCCAGAGCAGCCAGTACTCAACCTCTGAGCCATC
TCTCCAGCCCATGATAAGGTTCCCAACCCACATAGGAAGGGTTGGTTTAA
AGACCATTCCATCCTCCACGCAACTTAAAGTTACCTTTGAAAAAAGAAGG
CCCTGCAATTTTGGCACTGGCCTGTTAGAGAGACACATTTGACCCACTCA
TTCAATTCAACCTCTTCAGCTGTCACCAGGATAACTCTTCTCTTTCTCAT
GTTGGTAGTTTTTTTTCTGTGTGAAATACACATGAGAGTCTATTTAAGCA
GCTAATACAGTGAACTTTGTTAATTAAAAGTCTTTATATACGTGGATTTT
ACTCATTACAAAGACTATTCCAAGAAAGAATATTCAATCTAAGTGTTAGT
TGTCCAGTAATAAGAAATTAAGTTAAATTTTCAAAAATTAGCGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_b17.g1 MSMg01no156_b17.g1 CHROMAT_FILE:
MSMg01no156_b17.g1 PHD_FILE: MSMg01no156_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:09 2005
         (288 letters)



>mm_chr8_58947272_58947958
          Length = 687

 Score =  518 bits (268), Expect = e-151
 Identities = 284/290 (97%), Gaps = 3/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctttgtttgacacatatctaaagattgaatgtgcctaatgaagggttccattcagtct 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ccctttgtttgacacatatctaaagattgaatatgcctaatgaagggttccattcagtct 260

                                                                       
Query: 61  acagaagagagagtaaatatggatttttaaagaggttttctttaaaagaaaaaaaaaa-- 118
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||  
Sbjct: 261 acagaagagagggtaaatatggattttt-aagaggttttctttaaaagaaaaaaaaaaac 319

                                                                       
Query: 119 cactcatttactatgtatagtgccctgccagcatgtatgactgcaggccaaaacaaggga 178
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cactcatttactatgtataatgccctgccagcatgtatgactgcaggccaaaacaaggga 379

                                                                       
Query: 179 ccagatctcattacaaatggtcatgagattccatgtagtttctgggaattgaactcaaga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccagatctcattacaaatggtcatgagattccatgtagtttctgggaattgaactcaaga 439

                                                             
Query: 239 cctcttccagagcagccagtactcaacctctgagccatctctccagccca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctcttccagagcagccagtactcaacctctgagccatctctccagccca 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space:   189162
Effective search space used:   189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)