BAC Information

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BAC

Clone NameMSMg01-156F06
Chromosome8 (Build37)
Map Location 84,394,260 - 84,394,559
singlet/doubletsinglet
Overlap geneInpp4b
Upstream geneGab1, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
Downstream geneLOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330, Rnf150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156F06.T7 (MSMg01no156_f06.b1)MSMg01-156F06.TJ (MSMg01no156_f06.g1)
ACCAG357097AG357098
length725745
length of high quality
(start - end)
306 (45 - 350)234 (76 - 309)
definitionCHROMAT_FILE: MSMg01no156_f06.b1 PHD_FILE: MSMg01no156_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:26 2005CHROMAT_FILE: MSMg01no156_f06.g1 PHD_FILE: MSMg01no156_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGATATCTGAGCTCTACCCTCACATCCCTGCCAGCTCTTCCCAACC
ACTTTTGTTTTGTTCCTTTTCATTCTTCATATAAGAGCTTTATTTTCTTA
AAGCTCTGGATAGAGGCCTTTGGCGTCCAATCATCTGATTCTCTCCCATG
TCTAAGGTGAACTTCATTTGTCACTCTCCATCTTGTAGGACTTTAAATTG
TTGATACAGTGTCATCTCCACATGACTTCTGCATTCAGTAGCCAAGTCAA
TGACCTTTACAATTCACTGAGTTCTTAGGGTTTTTCTATTCCATATCATC
CACCTATTTTTTTTTCTTGCCACCGCCCACCTACTTGACAGATGGTGTTA
ATCTTATCTCTCCCCCCCCCCAAAATAAAACATACTGCTTCATATATTTC
TAGAACACTCCATGTAATACTTCGGTGACTCTTGAGTCACTACTTTTACT
GTTTCATCCTTGTCTTTCACAGCATTCTCTAAAATCCTCTGCTTTGCCCT
TCTAAGACTTTCCTGGCCCATCCCTTCTAAATCACACGTTATGCCCTTCC
CCTATTACTTCCCTTTTCTATTGATTACCCCATAACTTATCTAACTATTT
ATCCAATATTATAAGTTATTATTTCTGACACTACGTAGTTTACCTAACCC
CTCCTGTCTAGCTCATTCACCTTGG
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTT
TTAATGGGGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATA
TATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTT
CCCAATCTGTTGGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTG
CAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCATAC
TTTTAATAAACAATAAGTGTATTAAATTTATTTTTATACAACACAATTTC
AAGTTTCATTATTTTTTGTTCCCCCCCCACGCTTTTTACATTCCATGGTT
TACCATCCGTTTTTACCCCCCCACAAATAACAAGTGTTCCTAAGCAAACC
TGCATCTGTATGGAACCTGTGGTATACTTGATGTCTAAGTGGATATTCCC
CATAAAATCTACATTATACTGATACCTTCCATACTGCTTAAACTGTACTA
GGCCCTTATTAGTATAAATTATGTCCCTTCCTCGCCTTTTTATGCTGTTC
ACAAACCCTTTCTCTTATGTCATATTCGACATTACTCCCTCCCCCTGTTA
CATTTTTTACCTTTATTTGCCCTCCCCTCCCTTTTCTTCCTATTTCCTTA
TTCCGCACTTTCTTTTTTCACCCTTTTTTTTACCCCTTATTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_f06.b1 MSMg01no156_f06.b1 CHROMAT_FILE:
MSMg01no156_f06.b1 PHD_FILE: MSMg01no156_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:26 2005
         (306 letters)



>mm_chr8_84394056_84394761
          Length = 706

 Score =  572 bits (296), Expect = e-168
 Identities = 299/300 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgatatctgagctctaccctcacatccctgccagctcttcccaaccacttttgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgatatctgagctctaccctcacatccctgccagctcttcccaaccacttttgt 264

                                                                       
Query: 65  tttgttccttttcattcttcatataagagctttattttcttaaagctctggatagaggcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgttccttttcattcttcatataagagctttattttcttaaagctctggatagaggcc 324

                                                                       
Query: 125 tttggcgtccaatcatctgattctctcccatgtctaaggtgaacttcatttgtcactctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttggcgtccaatcatctgattctctcccatgtctaaggtgaacttcatttgtcactctc 384

                                                                       
Query: 185 catcttgtaggactttaaattgttgatacagtgtcatctccacatgacttctgcattcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catcttgtaggactttaaattgttgatacagtgtcatctccacatgacttctgcattcag 444

                                                                       
Query: 245 tagccaagtcaatgacctttacaattcactgagttcttagggtttttctattccatatca 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 tagccaagtcaatgacctttacaattcactgagctcttagggtttttctattccatatca 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)