BAC Information

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BAC

Clone NameMSMg01-157B12
Chromosome8 (Build37)
Map Location 129,757,087 - 129,757,393
singlet/doubletsinglet
Overlap genePard3
Upstream geneSlc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2, Tomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1
Downstream geneEG628847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157B12.T7 (MSMg01no157_b12.b1)MSMg01-157B12.TJ (MSMg01no157_b12.g1)
ACCAG357664AG357665
length715714
length of high quality
(start - end)
315 (45 - 359)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no157_b12.b1 PHD_FILE: MSMg01no157_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:23 2005CHROMAT_FILE: MSMg01no157_b12.g1 PHD_FILE: MSMg01no157_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGTCATCATACCTAACTAAAGGCAGGCCCCTTTACCTGTTGAGCC
ATCCCACTCCCTCATCATTTACTTTAAACAACATAACTAGTAGTTCCATT
TGAGTAGTCTACTTTTTTGTAAAGGGAAATAAAATCACCATTTATGGTAA
CATGTAAAAACTGAGGCCAACCAAAAGTAGTAAGCAAGATACTTGTGCAT
CTGAGAGTAACTCAGCTTCCTCTGCTAATTCATCCAAGCCTTCAGTGCTA
TTTTCAAGCCAAAGAATCTCTCAGTTCTGTGAGTAAAACCGTTGCCTCTT
TTACATGATTCTTCACCGCCACCCCCCAGGATAGGAGGAAAAATGTGGCA
AGCATTTATAGTTACCGCATGTTTAAGAATTCATTGCTCCAAATACTCAT
ATTTATCATAATTTGGTGGGAGTTTTCCTTTGTAGAAATTCTGTTGCTTG
GATGACCTGAGAGCACATAACTGACCAGCCGGAACCCAGTGGGATTTGCT
TGCTTTCTTTTGCTAACCTAGACTCCTACCTCATTTTTCCTAATAACTTA
GAAGACTAATATTCTTAATTTCCAAATCGCTAACCTTGTCTAAGTGAAAC
ACATCACATGACATTCAATACCAGACCCTACATTTAAATGGGGAAGTAAT
TTCACAAACCAGCAT
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCACTGATGACATGCATGTATTGG
TCTGCCTTACATTGAGTAGTTAAGCTGCATTTGTCGGGACTCCATAAAGA
GAAACACAGACTTCTGGTGGTGTGCTGCAGTTTCTTGCCACTTCAGTGGA
CTTGGGTTGATTGGCAGACTGATGTCAACTGAGGCAAGACTCATGGAGGA
CATGGGATGTTTGTAGGGTATAAATAGGACTCAATGGACAATGATGGCAG
TTGAACTAGATTGCTTACAGAGCTAGTTGTGCCTCTCTTGTGGGTCTCGA
GTCTTCACTGATCTTTGCTCTCCGCTCACCAGAGGCACAGCAGAGAACTT
CTCCTGGTATTCCTCCTGGCCCTTTCTGCTGACTCGTGCTGAGGCTGAGG
CCTGGCTGTCTCTGTTAGGTAGTGCCACTGTTGTGGATTCTTGTTTGATA
TCCCTACTCTACCAAGCTGGACTGCTAATATATTCATGAAGTGTTTACAA
GTGGATCGAGCTGCCACTGGTAACTGAACTGAACTGTTGATTTCTAGACA
CCACAGACAGGAGTTGCTTCCAAGAATGTTCCTAAACAGGTCCACTTCCC
CCATATCCTTTCTTTCCCACTACCTCTGGAGGGATGAAAGGGAGGTTAAA
GTGTTTTAAGAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_b12.b1 MSMg01no157_b12.b1 CHROMAT_FILE:
MSMg01no157_b12.b1 PHD_FILE: MSMg01no157_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:23 2005
         (315 letters)



>mm_chr8_129756883_129757594
          Length = 712

 Score =  536 bits (277), Expect = e-157
 Identities = 301/311 (96%), Gaps = 5/311 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtcatcatacctaactaaaggcaggcccctttacctgttgagccatcccact 64
           ||||||||||||||||||    ||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcatgtcatcatac----ctaaaggcaggcccctttacctgctgagccatcccact 260

                                                                       
Query: 65  ccctcatcatttactttaaacaacataactagtagttccatttgagtagtctactttttt 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ccctcatcatttactttaaacaacataactagtagctccatttgagtagtctactttttt 320

                                                                       
Query: 125 -gtaaagggaaataaaatcaccatttatggtaacatgtaaaaactgaggccaaccaaaag 183
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtaaagggaaataagatcaccatttatggtaacatgtaaaaactgaggccaaccaaaag 380

                                                                       
Query: 184 tagtaagcaagatacttgtgcatctgagagtaactcagcttcctctgctaattcatccaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtaagcaagatacttgtgcatctgagagtaactcagcttcctctgctaattcatccaa 440

                                                                       
Query: 244 gccttcagtgctattttcaagccaaagaatctctcagttctgtgagtaaaaccgttgcct 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 accttcagtgctattttcaagccaaagaatctctcagttctgtgagtaaaaccgttccct 500

                      
Query: 304 cttttacatga 314
           |||||||||||
Sbjct: 501 cttttacatga 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 712
Length adjustment: 9
Effective length of query: 306
Effective length of database: 703
Effective search space:   215118
Effective search space used:   215118
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)